Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,366,751 Δ3,335 bp IS5‑mediated yhcE–[nanK] yhcE, yhcF, yhcG, yhcH, [nanK]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3365685–3366755 3370085 3331–4401 18 [14] [2] 97 insH‑10–[nanK] insH‑10,yhcE,yhcF,yhcG,yhcH,[nanK]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3366750NA (NA)95 (1.270) 61/278 0.1 97.9% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3370086 = 2 (0.030)coding (265/876 nt) nanK N‑acetylmannosamine kinase

GATK/CNVnator alignment

N/A