Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,312,710 C→A L94F (TTG→TTT)  alsR ← DNA‑binding transcriptional repressor AlsR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,312,7100CA100.0% 312.4 / NA 87L94F (TTG→TTT) alsRDNA‑binding transcriptional repressor AlsR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (41/46);  total (41/46)

ATAGAAAAAGCGGGCGGCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAAT  >  NC_000913/4312575‑4312844
                                                                                                                                       |                                                                                                                                      
aTAGAAAAAGCGGGCGGCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATa                                                                                                                                    <  1:798488/140‑1 (MQ=255)
 tAGAAAAAGCGGGCGGCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATAc                                                                                                                                   >  1:510980/1‑140 (MQ=255)
 tAGAAAAAGCGGGCGGCACGGTGGATCTCATCAACGGTGACGATCGACTTAACTTCCATAATGGTGCGTAAAGGGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTCCATCAAAAGCCAACTCGGAAGGAAATAc                                                                                                                                   >  1:969283/1‑140 (MQ=255)
      aaaGCGGGCGGCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGtt                                                                                                                              <  1:455021/140‑1 (MQ=255)
          cgggcggCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTctga                                                                                                                          >  1:170641/1‑140 (MQ=255)
          cgggcggCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTctga                                                                                                                          >  2:973412/1‑140 (MQ=255)
            ggcggcACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTctgact                                                                                                                        <  2:706109/140‑1 (MQ=255)
              cggcACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTctgactga                                                                                                                      <  2:1151366/140‑1 (MQ=255)
                  aCGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGaaa                                                                                                                  <  1:616846/140‑1 (MQ=255)
                   cGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGaaaa                                                                                                                 >  1:245902/1‑140 (MQ=255)
                       ggATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAaataa                                                                                                             <  2:969283/140‑1 (MQ=255)
                       ggATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGCCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAaataa                                                                                                             <  2:510980/140‑1 (MQ=255)
                         aTCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATc                                                                                                           <  1:602109/140‑1 (MQ=255)
                           ctcATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCtt                                                                                                         <  1:1114261/140‑1 (MQ=255)
                              atcaACGTTGACGATCGACTGACCTTCCATAATGGTGCGTCAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAGTAATCTTccc                                                                                                      >  2:748178/1‑139 (MQ=255)
                               tcaACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAg                                                                                                     >  2:1039925/1‑140 (MQ=255)
                                 aaCGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAgcg                                                                                                   <  1:1039925/140‑1 (MQ=255)
                                  aCGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAgcgc                                                                                                  <  1:378072/140‑1 (MQ=255)
                                   cGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCa                                                                                                 >  1:326765/1‑140 (MQ=255)
                                   cGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCa                                                                                                 <  2:559688/140‑1 (MQ=255)
                                   cGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCa                                                                                                 <  1:873390/140‑1 (MQ=255)
                                      tGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTg                                                                                              >  2:577561/1‑140 (MQ=255)
                                        aCGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCg                                                                                            <  1:970587/140‑1 (MQ=255)
                                         cGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGt                                                                                           <  1:356603/140‑1 (MQ=255)
                                           aTCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTaa                                                                                         <  1:19768/140‑1 (MQ=255)
                                             cGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGt                                                                                       >  1:192071/1‑140 (MQ=255)
                                                  gACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGa                                                                                  >  1:1227652/1‑140 (MQ=255)
                                                   aCCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATTCCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGaa                                                                                 <  2:882229/140‑1 (MQ=255)
                                                   aCCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGaa                                                                                 <  2:192071/140‑1 (MQ=255)
                                                    ccTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGaaa                                                                                <  1:973412/140‑1 (MQ=255)
                                                     cTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCGCATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAg                                                                               <  1:474726/140‑1 (MQ=255)
                                                           aaaTGGTGCGTAAAGTAATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTa                                                                         <  2:67815/139‑1 (MQ=255)
                                                              tGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAc                                                                      >  1:298663/1‑140 (MQ=255)
                                                              tGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAc                                                                      >  1:1129443/1‑140 (MQ=255)
                                                              tGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAc                                                                      >  2:7715/1‑140 (MQ=255)
                                                              tGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAc                                                                      >  1:244959/1‑140 (MQ=255)
                                                              tGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAc                                                                      <  1:797580/140‑1 (MQ=255)
                                                                 tGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAGAcccc                                                                   >  2:778634/1‑140 (MQ=255)
                                                                 tGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAAcccc                                                                   >  1:7826/1‑140 (MQ=255)
                                                                  gCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCca                                                                  >  1:176124/1‑140 (MQ=255)
                                                                  gCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCca                                                                  >  2:300946/1‑140 (MQ=255)
                                                                   cGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcag                                                                 >  1:918907/1‑140 (MQ=255)
                                                                   cGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcag                                                                 >  2:521298/1‑140 (MQ=255)
                                                                   cGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcag                                                                 >  2:656916/1‑140 (MQ=255)
                                                                    gTAAAGTGATGTTAAATACCTTATTCACCACATCCTGTGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcagc                                                                <  1:978213/140‑1 (MQ=255)
                                                                    gTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcagc                                                                <  1:577561/140‑1 (MQ=255)
                                                                    gTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcagc                                                                <  2:918907/140‑1 (MQ=255)
                                                                     tAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTAGGAAAGCCGCTAAACCCcagca                                                               <  2:1126603/140‑1 (MQ=255)
                                                                      aaaGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGTGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcagcag                                                              <  2:245902/140‑1 (MQ=255)
                                                                      aaaGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCcagcag                                                              <  2:244959/140‑1 (MQ=255)
                                                                           gATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTg                                                         >  1:1177130/1‑140 (MQ=255)
                                                                            aTGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTg                                                         <  2:646070/139‑1 (MQ=255)
                                                                            aTGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTg                                                         >  1:646070/1‑139 (MQ=255)
                                                                            aTGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGa                                                        <  1:226084/140‑1 (MQ=255)
                                                                            aTGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGa                                                        <  2:176124/140‑1 (MQ=255)
                                                                                tAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATAcc                                                    >  1:1194247/1‑140 (MQ=255)
                                                                                tAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATAcc                                                    <  2:1194247/140‑1 (MQ=255)
                                                                                tAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATAcc                                                    <  1:521298/140‑1 (MQ=255)
                                                                                tAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATAcc                                                    <  1:544667/140‑1 (MQ=255)
                                                                                        ttATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTat                                            >  1:442769/1‑140 (MQ=255)
                                                                                         tATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatc                                           >  1:98123/1‑140 (MQ=255)
                                                                                         tATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatc                                           >  2:1129939/1‑140 (MQ=255)
                                                                                           ttCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatcat                                         >  1:651216/1‑140 (MQ=255)
                                                                                           ttCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatcat                                         >  1:1165695/1‑140 (MQ=255)
                                                                                           ttCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatcat                                         >  1:1097257/1‑140 (MQ=255)
                                                                                            tCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTatcatc                                        <  2:355472/140‑1 (MQ=255)
                                                                                                cacaTCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCtt                                    <  1:7715/140‑1 (MQ=255)
                                                                                                 acaTCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTc                                   >  2:376827/1‑140 (MQ=255)
                                                                                                  caTCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCa                                  >  1:598017/1‑140 (MQ=255)
                                                                                                   aTCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAg                                 >  1:925224/1‑140 (MQ=255)
                                                                                                   aTCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAg                                 >  2:707101/1‑140 (MQ=255)
                                                                                                    tCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGa                                <  2:170641/140‑1 (MQ=255)
                                                                                                     ccTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGAt                               >  2:892177/1‑140 (MQ=255)
                                                                                                     ccTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGAt                               >  1:691514/1‑140 (MQ=255)
                                                                                                        gcggcgCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATAcc                            >  2:559726/1‑140 (MQ=255)
                                                                                                         cggcgCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCg                           >  2:581643/1‑140 (MQ=255)
                                                                                                          ggcgCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATa                              <  2:415996/136‑1 (MQ=255)
                                                                                                          ggcgCTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATa                              >  1:415996/1‑136 (MQ=255)
                                                                                                              cTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCaga                      >  1:508372/1‑140 (MQ=255)
                                                                                                              cTTCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCaga                      >  1:407704/1‑140 (MQ=255)
                                                                                                               ttCATCAAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCagag                     <  2:1177130/140‑1 (MQ=255)
                                                                                                                 catcaAAAGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCt                   >  1:590626/1‑140 (MQ=255)
                                                                                                                    aaaaaGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCt                <  2:508372/139‑1 (MQ=255)
                                                                                                                       aaGCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCg             <  2:98123/140‑1 (MQ=255)
                                                                                                                         gCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGAc           <  2:651216/140‑1 (MQ=255)
                                                                                                                         gCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGAc           <  2:1165695/140‑1 (MQ=255)
                                                                                                                         gCCAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGAc           <  1:296826/140‑1 (MQ=255)
                                                                                                                         gCCAAATCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGAc           <  1:748178/140‑1 (MQ=255)
                                                                                                                          ccAACTCGGAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACa          <  1:559726/140‑1 (MQ=255)
                                                                                                                           cAACCCGGAAGGAAAAACCTGATATGACTGAGAAACATAATCTTCCAGCGCACTGCGTAAGCTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACAt         >  2:911591/1‑140 (MQ=255)
                                                                                                                                  gAAGGAAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAAt  <  2:407704/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
ATAGAAAAAGCGGGCGGCACGGTGGATCTCATCAACGTTGACGATCGACTGACCTTCCATAATGGTGCGTAAAGTGATGTTAAATACCTTATTCACCACATCCTGCGGCGCTTCATCAAAAGCCAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAAT  >  NC_000913/4312575‑4312844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A