Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F48 I1 R1	61	131.2	4447032	99.1%	4407008	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,999,154	G→T	G246G (GGC→GGA)	ygeR ←	LysM domain‑containing putative peptidase lipoprotein YgeR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,999,154	0	G	T	100.0%	656.1 / NA	181	G246G (GGC→GGA)	ygeR	LysM domain‑containing putative peptidase lipoprotein YgeR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (103/78); total (103/78)

Only 100 of 184 total aligned reads displayed.

AGCTTGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTA  >  NC_000913/2999018‑2999289

agCTTGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTccc                                                                                                                                      >  2:1677636/1‑140 (MQ=255)

agCTTGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTccc                                                                                                                                      >  1:1666869/1‑140 (MQ=255)

  cTTGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTg                                                                                                                                    >  1:1966139/1‑140 (MQ=255)

    tGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGat                                                                                                                                  >  2:862231/1‑139 (MQ=255)

    tGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAg                                                                                                                                  >  1:406534/1‑140 (MQ=255)

    tGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAg                                                                                                                                  <  2:406534/140‑1 (MQ=255)

    tGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAg                                                                                                                                  <  2:35162/140‑1 (MQ=255)

     gggAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAgg                                                                                                                                 >  1:581204/1‑140 (MQ=255)

     gggAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAgg                                                                                                                                 >  1:268102/1‑140 (MQ=255)

       gAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAggcg                                                                                                                               <  1:1381592/140‑1 (MQ=255)

         aGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAggcggc                                                                                                                             <  1:1497993/140‑1 (MQ=255)

          gCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAggcg                                                                                                                               >  2:2109348/1‑137 (MQ=255)

               cGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTaa                                                                                                                       >  1:1109244/1‑140 (MQ=255)

               cGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTaa                                                                                                                       <  2:476374/140‑1 (MQ=255)

                 ttCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACg                                                                                                                     <  2:263071/140‑1 (MQ=255)

                  tCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGt                                                                                                                    <  1:1823210/140‑1 (MQ=255)

                          tGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATc                                                                                                            >  1:450206/1‑140 (MQ=255)

                          tGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATc                                                                                                            >  2:1305918/1‑140 (MQ=255)

                            aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCaa                                                                                                          >  2:2035302/1‑140 (MQ=255)

                            aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCaa                                                                                                          >  2:1892945/1‑140 (MQ=255)

                            aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCaa                                                                                                          >  2:1652127/1‑140 (MQ=255)

                            aaCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCaa                                                                                                          >  2:1433483/1‑140 (MQ=255)

                             aCTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAAt                                                                                                         <  1:1677636/140‑1 (MQ=255)

                              cTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAAtt                                                                                                        >  1:853021/1‑140 (MQ=255)

                               tACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTg                                                                                                       <  1:466917/140‑1 (MQ=255)

                                aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGc                                                                                                      >  1:37200/1‑140 (MQ=255)

                                aCGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGC‑GATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGcc                                                                                                     >  1:1152557/1‑140 (MQ=255)

                                 cGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGcc                                                                                                     >  2:1505873/1‑140 (MQ=255)

                                 cGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGcc                                                                                                     >  2:1009418/1‑140 (MQ=255)

                                  gCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCg                                                                                                    >  2:1576980/1‑140 (MQ=255)

                                   cccGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGt                                                                                                   >  1:893567/1‑140 (MQ=255)

                                    ccGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGtt                                                                                                  <  1:2183310/140‑1 (MQ=255)

                                      gCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGc                                                                                                >  1:1086018/1‑140 (MQ=255)

                                                           tataAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATg                                                                           >  2:1716454/1‑140 (MQ=255)

                                                            ataAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGc                                                                          <  1:956709/140‑1 (MQ=255)

                                                                   ttACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGaa                                                                   >  2:2111222/1‑140 (MQ=255)

                                                                    tACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAAc                                                                  >  1:354566/1‑140 (MQ=255)

                                                                    tACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAAc                                                                  >  1:1029156/1‑140 (MQ=255)

                                                                     aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                 >  2:2178286/1‑140 (MQ=255)

                                                                     aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                 >  1:699932/1‑140 (MQ=255)

                                                                     aCGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACa                                                                 >  2:895021/1‑140 (MQ=255)

                                                                           tcCTTAGCAATAGCCACGCCGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTGGAACGGGAACGAATCTGGAAATGCAGTCGACCAGATGct                                                           >  2:1793885/1‑139 (MQ=255)

                                                                           tcCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGcc                                                           >  2:1218277/1‑140 (MQ=255)

                                                                           tcCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGcc                                                           >  2:533598/1‑140 (MQ=255)

                                                                            ccTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCg                                                          <  1:1936903/140‑1 (MQ=255)

                                                                               tAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCAt                                                       <  2:699932/140‑1 (MQ=255)

                                                                                aGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATc                                                      >  2:1778647/1‑140 (MQ=255)

                                                                                 gCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATcc                                                     <  1:2111222/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  1:2178286/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  1:1645776/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  1:525502/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  2:445761/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  2:451195/140‑1 (MQ=255)

                                                                                    aGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTg                                                  <  2:1086018/140‑1 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  1:222375/1‑140 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  2:736729/1‑140 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  1:336889/1‑140 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  1:1448212/1‑140 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  2:469087/1‑140 (MQ=255)

                                                                                     gTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGc                                                 >  1:46826/1‑140 (MQ=255)

                                                                                      tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                <  2:1029156/140‑1 (MQ=255)

                                                                                      tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                <  2:712856/140‑1 (MQ=255)

                                                                                      tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                <  1:1779703/140‑1 (MQ=255)

                                                                                      tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                <  1:1892945/140‑1 (MQ=255)

                                                                                      tGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCt                                                >  1:156977/1‑140 (MQ=255)

                                                                                       gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                               >  2:1637660/1‑140 (MQ=255)

                                                                                       gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                               >  2:1961383/1‑140 (MQ=255)

                                                                                       gCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTc                                               >  2:512659/1‑140 (MQ=255)

                                                                                        ccACGCTACTGACTGCTGATAAATACGCCATCAGGAATTGGTCTTGCGTCCCTGAGGCGGCAAAAAGCGTAGCCGGTCGAGGATCGTGAGACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTcc                                              >  2:2088130/1‑140 (MQ=255)

                                                                                           cGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTcccct                                           >  2:337649/1‑139 (MQ=255)

                                                                                           cGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCa                                           >  1:67098/1‑140 (MQ=255)

                                                                                            gctgctGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCAt                                          >  2:2150296/1‑140 (MQ=255)

                                                                                                ctgactgctgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTg                                      >  1:375412/1‑140 (MQ=255)

                                                                                                   actgctgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCg                                   >  1:781076/1‑140 (MQ=255)

                                                                                                       ctgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAttt                               >  1:1256719/1‑140 (MQ=255)

                                                                                                        tgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttt                              >  2:1776987/1‑140 (MQ=255)

                                                                                                        tgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttt                              >  1:731344/1‑140 (MQ=255)

                                                                                                        tgaTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttt                              <  2:1378629/140‑1 (MQ=255)

                                                                                                          aTTAATTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGAtttttt                            >  1:212280/1‑140 (MQ=255)

                                                                                                             aaTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                         <  2:847209/140‑1 (MQ=255)

                                                                                                             aaTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                         <  2:46826/140‑1 (MQ=255)

                                                                                                             aaTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                         <  1:1307701/140‑1 (MQ=255)

                                                                                                             aaTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGcc                         <  2:1166753/140‑1 (MQ=255)

                                                                                                              aTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGccc                        <  2:1580883/140‑1 (MQ=255)

                                                                                                              aTTCGCCATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGccc                        <  2:1109244/140‑1 (MQ=255)

                                                                                                                    cATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCtt                  <  1:2068521/140‑1 (MQ=255)

                                                                                                                    cATCAGCATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCtt                  >  2:133839/1‑140 (MQ=255)

                                                                                                                          cATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt            <  2:37200/140‑1 (MQ=255)

                                                                                                                          cATTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAAATGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt            <  1:1014835/140‑1 (MQ=255)

                                                                                                                          aaTTTTGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCt            <  2:866774/139‑1 (MQ=255)

                                                                                                                              ttGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGc        >  1:1361233/1‑140 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:1218277/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:866371/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  2:222375/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:533858/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:2091442/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:1009418/140‑1 (MQ=255)

                                                                                                                               tGGCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATACCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGcc       <  1:1505873/140‑1 (MQ=255)

                                                                                                                                ggCTTGCTTCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGccc      <  2:781076/140‑1 (MQ=255)

                                                                                                                                    tgcttcCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCatta  >  1:695097/1‑140 (MQ=255)

AGCTTGGGAAGCTCTCGTTCTACCATTGAACTACGCCCGCTTCGAGATGCGTAAGGCATTATAAACCTTACGCTCTCCTTAGCAAGTGCCACGCTGCTGACTGCTGATTAATTCGCCATCAGCATTTTGGCTTGCTGCCCTGAGGCGGCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTGCCCAGCCTTCACGCTTTGCCCATTA  >  NC_000913/2999018‑2999289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A