Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F48 I1 R1 61 131.2 4447032 99.1% 4407008 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,920,655 C→A Q78H (CAG→CAT)  atpF ← ATP synthase Fo complex subunit b

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,920,6550CA100.0% 341.7 / NA 95Q78H (CAG→CAT) atpFATP synthase Fo complex subunit b
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (58/37);  total (58/37)

ACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGAC  >  NC_000913/3920518‑3920782
                                                                                                                                         |                                                                                                                               
aCTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATg                                                                                                                               <  1:1667038/140‑1 (MQ=255)
  ttGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCt                                                                                                                             <  1:605104/140‑1 (MQ=255)
  ttGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCt                                                                                                                             <  1:1251101/140‑1 (MQ=255)
  ttGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCt                                                                                                                             <  2:700/140‑1 (MQ=255)
  ttGCTTACGCAACTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCt                                                                                                                             <  2:2143416/140‑1 (MQ=255)
   tGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTc                                                                                                                            >  1:659369/1‑140 (MQ=255)
    gCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCg                                                                                                                           >  2:2110338/1‑140 (MQ=255)
      ttACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCgat                                                                                                                         <  2:768723/140‑1 (MQ=255)
       tACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCgatg                                                                                                                        <  2:1428050/140‑1 (MQ=255)
              ctctTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCt                                                                                                                 >  2:133584/1‑140 (MQ=255)
              ctctTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCt                                                                                                                 >  2:501053/1‑140 (MQ=255)
              ctctTCACGGGCACGTTTACCCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTTTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGTTTATTACCt                                                                                                                 >  2:2094818/1‑140 (MQ=255)
               tctTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTg                                                                                                                >  1:887744/1‑140 (MQ=255)
                   cACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCt                                                                                                            >  1:1166092/1‑140 (MQ=255)
                        gCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgc                                                                                                       >  1:2843/1‑140 (MQ=255)
                           cGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgcttt                                                                                                    >  1:1863762/1‑140 (MQ=255)
                           cGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgcttt                                                                                                    >  1:1088351/1‑140 (MQ=255)
                             tttACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgctttcg                                                                                                  <  2:1863762/140‑1 (MQ=255)
                                aCGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgctttcgctt                                                                                               >  1:601243/1‑140 (MQ=255)
                                   cTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgctttcg                                                                                                  <  1:1284076/134‑1 (MQ=255)
                                   cTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCcgctttcg                                                                                                  >  2:1284076/1‑134 (MQ=255)
                                      ggCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCa                                                                                         >  1:178978/1‑140 (MQ=255)
                                      ggCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCa                                                                                         >  2:1093377/1‑140 (MQ=255)
                                      ggCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCa                                                                                         >  2:755410/1‑140 (MQ=255)
                                      ggCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCa                                                                                         >  2:1155078/1‑140 (MQ=255)
                                        cTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGc                                                                                       >  1:952898/1‑140 (MQ=255)
                                        cTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGc                                                                                       >  2:917533/1‑140 (MQ=255)
                                        cTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGc                                                                                       >  1:44540/1‑140 (MQ=255)
                                                tCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTggtcggt                                                                               <  2:337452/140‑1 (MQ=255)
                                                  cgcctgcgcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGgtcggtcg                                                                             >  1:508241/1‑140 (MQ=255)
                                                  cgcctgcgcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGgtcggtcg                                                                             >  2:2139983/1‑140 (MQ=255)
                                                  cgcctgcgcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGgtcggtcg                                                                             >  1:687124/1‑140 (MQ=255)
                                                     ctgcgcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCgcgc                                                                          <  1:2110338/140‑1 (MQ=255)
                                                        cgcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTgg                                                                       >  1:2066166/1‑140 (MQ=255)
                                                         gcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGc                                                                      <  2:658153/140‑1 (MQ=255)
                                                         gcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGc                                                                      <  1:755410/140‑1 (MQ=255)
                                                         gcctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCAAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGc                                                                      <  2:1383262/140‑1 (MQ=255)
                                                          cctgGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGATCGGTCGCGCTGGcc                                                                     >  1:1031028/1‑140 (MQ=255)
                                                               gCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGc                                                                <  2:1927059/140‑1 (MQ=255)
                                                                 cACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaa                                                              <  2:178978/140‑1 (MQ=255)
                                                                 cACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaa                                                              <  1:977815/140‑1 (MQ=255)
                                                                 cACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaa                                                              <  2:1139498/140‑1 (MQ=255)
                                                                   cGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaagg                                                            >  1:1024868/1‑140 (MQ=255)
                                                                   cGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaagg                                                            >  2:2198985/1‑140 (MQ=255)
                                                                      ttttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  2:44540/140‑1 (MQ=255)
                                                                      ttttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  1:2139983/140‑1 (MQ=255)
                                                                      ttttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  2:1088351/140‑1 (MQ=255)
                                                                      ttttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  2:1024868/140‑1 (MQ=255)
                                                                      atttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  2:1004917/139‑1 (MQ=255)
                                                                        ttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtcaag                                                       <  2:659369/140‑1 (MQ=255)
                                                                        ttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtcaag                                                       >  2:794065/1‑140 (MQ=255)
                                                                        ttAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtcaag                                                       <  1:133584/140‑1 (MQ=255)
                                                                           gTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCaaggtcaaggtc                                                    <  1:1232315/140‑1 (MQ=255)
                                                                              cGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCtt                                                 >  1:651793/1‑140 (MQ=255)
                                                                                ttCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTAt                                               >  1:475800/1‑140 (MQ=255)
                                                                                ttCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTAt                                               >  2:916454/1‑140 (MQ=255)
                                                                                     gTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         >  2:581040/1‑125 (MQ=255)
                                                                                     gTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGcaaggtca                                                         <  1:581040/125‑1 (MQ=255)
                                                                                     gTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTcc                                                   <  1:1442859/131‑1 (MQ=255)
                                                                                     gTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTcc                                                   >  2:1442859/1‑131 (MQ=255)
                                                                                        cTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGt                                       <  1:2212729/140‑1 (MQ=255)
                                                                                         tGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGtt                                      <  2:16659/140‑1 (MQ=255)
                                                                                         tGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGtt                                      <  2:475800/140‑1 (MQ=255)
                                                                                         tGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGtt                                      <  2:887744/140‑1 (MQ=255)
                                                                                         tGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGtt                                      >  2:690803/1‑140 (MQ=255)
                                                                                          gCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTc                                     >  1:413058/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  1:397843/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:1377448/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:577375/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:1748068/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:1728958/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:1720441/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:1614520/1‑140 (MQ=255)
                                                                                           ccTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCt                                    >  2:549216/1‑140 (MQ=255)
                                                                                             tCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGc                                  >  2:223860/1‑140 (MQ=255)
                                                                                               aGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCgg                                <  1:1790513/140‑1 (MQ=255)
                                                                                                gCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGa                               >  2:267062/1‑140 (MQ=255)
                                                                                                gCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGa                               >  1:1371106/1‑140 (MQ=255)
                                                                                                    tCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCa                           <  1:1363875/140‑1 (MQ=255)
                                                                                                           gTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATTATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGt                    >  1:2007377/1‑140 (MQ=255)
                                                                                                           gTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGt                    <  1:1162486/140‑1 (MQ=255)
                                                                                                           gTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGt                    <  1:690803/140‑1 (MQ=255)
                                                                                                           gTCCAGAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGt                    >  1:90712/1‑140 (MQ=255)
                                                                                                                gAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCa               >  1:1885445/1‑140 (MQ=255)
                                                                                                                gAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCa               >  2:1520912/1‑140 (MQ=255)
                                                                                                                gAATCTGCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCa               >  2:847893/1‑140 (MQ=255)
                                                                                                                      gCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCt         >  2:1349481/1‑140 (MQ=255)
                                                                                                                      gCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCt         >  2:1187510/1‑140 (MQ=255)
                                                                                                                      gCGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCt         >  1:957486/1‑140 (MQ=255)
                                                                                                                       cGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGTTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCtt        >  2:587906/1‑140 (MQ=255)
                                                                                                                       cGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCtt        >  2:434348/1‑140 (MQ=255)
                                                                                                                       cGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCtt        >  1:1766117/1‑140 (MQ=255)
                                                                                                                       cGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCtt        >  2:1756661/1‑140 (MQ=255)
                                                                                                                       cGAGCGGCGTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCtt        >  2:975686/1‑140 (MQ=255)
                                                                                                                             gcgTTTGTTCGCATGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGAc  <  2:397843/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                               
ACTTGCTTACGCAGCTCTTCACGGGCACGTTTACGCTCGGCTTCAATTTCCGCCTGCGCCTGGGCCACGATTTTAGTACGTTCCTGTTCTGCCTCAGCTTTCGCTTCGTCCAGAATCTGCGAGCGGCGTTTGTTCGCCTGCTCGATGATTACCTGGGCTTCCGCTTTCGCTTTTTTCAGCTGGTCGGTCGCGCTGGCCTTTGCAAGGTCAAGGTCCTTATGTGCTCGTTCTGCGGAAGCAAGGCCGTCAGCAATTTCTTTTTGAC  >  NC_000913/3920518‑3920782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A