Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F48 I1 R1	61	131.2	4447032	99.1%	4407008	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,231,947	G→T	F429L (TTC→TTA)	lysC ←	aspartate kinase III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,231,947	0	G	T	100.0%	520.8 / NA	144	F429L (TTC→TTA)	lysC	aspartate kinase III
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (68/76); total (68/76)

Only 100 of 149 total aligned reads displayed.

GCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCT  >  NC_000913/4231811‑4232082

gCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAg                                                                                                                                      >  2:1792736/1‑140 (MQ=255)

gCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAg                                                                                                                                      >  2:1270806/1‑140 (MQ=255)

gCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAg                                                                                                                                      >  1:1951731/1‑140 (MQ=255)

 cTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGc                                                                                                                                     >  1:900552/1‑140 (MQ=255)

  tCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    <  1:210598/140‑1 (MQ=255)

  tCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    <  2:2028166/140‑1 (MQ=255)

  tCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    <  2:269563/140‑1 (MQ=255)

  tCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    <  1:2163049/140‑1 (MQ=255)

  tCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    <  2:936909/140‑1 (MQ=255)

   cgcttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGGATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGcac                                                                                                                                   >  1:359358/4‑140 (MQ=255)

   cGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGcac                                                                                                                                   >  1:722398/1‑140 (MQ=255)

   cGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGcac                                                                                                                                   >  2:1190338/1‑140 (MQ=255)

    gTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGcaca                                                                                                                                  >  1:1461370/1‑140 (MQ=255)

     tttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATTGCTTACAGGCCATTCAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCCCCGGGCATCAGTAAAcacaa                                                                                                                                 >  2:1339559/1‑139 (MQ=255)

     tttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGca                                                                                                                                    >  2:137459/1‑137 (MQ=255)

     tttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAg                                                                                                                                 >  1:1151655/1‑140 (MQ=255)

      ttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAgg                                                                                                                                <  2:1461370/140‑1 (MQ=255)

      ttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAgg                                                                                                                                <  1:1296513/140‑1 (MQ=255)

      ttATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAgg                                                                                                                                <  2:961194/140‑1 (MQ=255)

        aTTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGtt                                                                                                                              <  1:1270806/140‑1 (MQ=255)

             tgaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGc                                                                                                                         <  2:1222560/140‑1 (MQ=255)

              gaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCt                                                                                                                        >  1:1788622/1‑140 (MQ=255)

              gaGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCt                                                                                                                        >  1:985521/1‑140 (MQ=255)

                gCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTgg                                                                                                                      >  1:865964/1‑140 (MQ=255)

                 cATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGa                                                                                                                     <  2:2101222/140‑1 (MQ=255)

                 cATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGa                                                                                                                     >  2:2154071/1‑140 (MQ=255)

                     gTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATgcg                                                                                                                 <  2:1919357/140‑1 (MQ=255)

                     gTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATgcg                                                                                                                 <  1:1416064/140‑1 (MQ=255)

                      tGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATtcgc                                                                                                                >  2:464964/1‑140 (MQ=255)

                       gACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGcc                                                                                                               <  1:1065360/140‑1 (MQ=255)

                         cAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCAt                                                                                                             >  1:2158750/1‑140 (MQ=255)

                           aGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATaa                                                                                                           >  1:1130684/1‑140 (MQ=255)

                           aGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATaa                                                                                                           >  1:1438606/1‑140 (MQ=255)

                           aGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATaa                                                                                                           >  1:1818665/1‑140 (MQ=255)

                            gAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATgcg                                                                                                                 >  2:821102/1‑133 (MQ=255)

                            gAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATgcg                                                                                                                 <  1:821102/133‑1 (MQ=255)

                            gAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAAc                                                                                                          <  1:2125366/140‑1 (MQ=255)

                                aTCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAAt                                                                                                      >  1:699617/1‑140 (MQ=255)

                                  cAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCa                                                                                                    >  2:146998/1‑140 (MQ=255)

                                          cccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATg                                                                                            <  1:1162818/140‑1 (MQ=255)

                                          cccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATg                                                                                            >  2:436007/1‑140 (MQ=255)

                                          cccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATg                                                                                            <  2:272710/140‑1 (MQ=255)

                                           ccGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGt                                                                                           >  1:102014/1‑140 (MQ=255)

                                              aaaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGa                                                                                        <  1:2154071/140‑1 (MQ=255)

                                              aaaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGa                                                                                        <  1:1355545/140‑1 (MQ=255)

                                              aaaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGa                                                                                        <  1:1208558/140‑1 (MQ=255)

                                               aaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGaa                                                                                       <  1:1524571/140‑1 (MQ=255)

                                               aaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGaa                                                                                       <  1:547605/140‑1 (MQ=255)

                                               aaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGaa                                                                                       <  1:245395/140‑1 (MQ=255)

                                               aaTATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGaa                                                                                       <  1:2082911/140‑1 (MQ=255)

                                                atatAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCGCCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAAc                                                                                      <  1:346605/140‑1 (MQ=255)

                                                atatAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAAc                                                                                      <  1:1190338/140‑1 (MQ=255)

                                                    aGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGtt                                                                                  >  1:414848/1‑140 (MQ=255)

                                                    aGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGtt                                                                                  >  2:1274642/1‑140 (MQ=255)

                                                      cTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTcc                                                                                >  2:804800/1‑140 (MQ=255)

                                                         ccAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGt                                                                             >  1:2011227/1‑140 (MQ=255)

                                                         ccAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGt                                                                             <  2:1788622/140‑1 (MQ=255)

                                                          cAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTa                                                                            <  1:23128/140‑1 (MQ=255)

                                                           aGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTAc                                                                           >  1:918442/1‑140 (MQ=255)

                                                           aGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTAc                                                                           >  1:1743798/1‑140 (MQ=255)

                                                           aGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTAc                                                                           >  2:885956/1‑140 (MQ=255)

                                                            ggCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACg                                                                          <  2:2188093/140‑1 (MQ=255)

                                                            ggCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACg                                                                          <  2:2158750/140‑1 (MQ=255)

                                                            ggCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACg                                                                          <  2:88475/140‑1 (MQ=255)

                                                            ggCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACg                                                                          <  1:420684/140‑1 (MQ=255)

                                                                aTACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGa                                                                      <  1:1334184/140‑1 (MQ=255)

                                                                aTACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGa                                                                      >  1:530620/1‑140 (MQ=255)

                                                                 tACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGaa                                                                     >  1:1468959/1‑140 (MQ=255)

                                                                    aGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATAc                                                                  <  2:669428/140‑1 (MQ=255)

                                                                       aTTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACctt                                                               >  2:645443/1‑139 (MQ=255)

                                                                        tttACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACctct                                                              >  1:781510/1‑140 (MQ=255)

                                                                              caaacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCa                                                        >  1:2117614/1‑140 (MQ=255)

                                                                                aacaaaTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAc                                                      >  2:1885626/1‑140 (MQ=255)

                                                                                     aTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgccgc                                                 <  2:1830251/140‑1 (MQ=255)

                                                                                     aTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgccgc                                                 <  2:400714/140‑1 (MQ=255)

                                                                                     aTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgccgc                                                 <  2:1743798/140‑1 (MQ=255)

                                                                                     aTTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAAcgccgc                                                 <  2:699617/140‑1 (MQ=255)

                                                                                         cTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGc                                             >  1:1737964/1‑140 (MQ=255)

                                                                                             gCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCtttt                                         >  2:192227/1‑140 (MQ=255)

                                                                                               aGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGa                                       >  1:77266/1‑140 (MQ=255)

                                                                                                gTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGAc                                      <  1:1885626/140‑1 (MQ=255)

                                                                                                    ttGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGt                                  <  1:467425/140‑1 (MQ=255)

                                                                                                      gCACCACCTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCa                                >  1:1510042/1‑140 (MQ=255)

                                                                                                           accTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGcc                           >  1:881811/1‑140 (MQ=255)

                                                                                                             cTGCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCaa                         >  1:817985/1‑140 (MQ=255)

                                                                                                               gCTCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATc                       >  2:567474/1‑140 (MQ=255)

                                                                                                                 tCGGCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCaa                     <  2:1113032/140‑1 (MQ=255)

                                                                                                                    gCATCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAAcgc                  >  2:2195971/1‑140 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  2:761608/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  1:2032000/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  1:464964/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  1:804800/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  1:192227/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               >  1:185006/1‑140 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  2:2117614/140‑1 (MQ=255)

                                                                                                                       tCTTCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGAc               <  2:1649316/140‑1 (MQ=255)

                                                                                                                          tCGCCGGGCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAg            >  2:501452/1‑140 (MQ=255)

                                                                                                                                 gCACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAATGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGa     >  1:1766695/1‑140 (MQ=255)

                                                                                                                                  cACCAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGAc    <  2:1951731/140‑1 (MQ=255)

                                                                                                                                    ccAGTAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACct  <  2:411798/140‑1 (MQ=255)

GCTCGTTTATTGATGAGCATAGTGACAAGAAAATCAATACGGCCCGAAATATAGCTTCCAGGCCATACAGTATTTACTCAAACAAATTACTATGCAGTTTTTGCACCACCTGCTCGGCATCTTCGCCGGGCACCAGGAAGCACAGGTTATGGCTGGATGCGCCATAACAAATCATGCGAATGTTGAACGGTTCCAGTACGCCGAATACCTCTTTGCCAACGCCGCAGGCTTTTGACAGGTCATTGCCAATCAACGCGACCAGCGCCAGACCT  >  NC_000913/4231811‑4232082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A