Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F48 I1 R1	61	131.2	4447032	99.1%	4407008	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,390,012	G→T	L117M (CTG→ATG)	psd ←	phosphatidylserine decarboxylase proenzyme

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,390,012	0	G	T	100.0%	472.6 / NA	131	L117M (CTG→ATG)	psd	phosphatidylserine decarboxylase proenzyme
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (74/57); total (74/57)

Only 100 of 135 total aligned reads displayed.

GCCCGGCACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCAGGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCGTCACG  >  NC_000913/4389875‑4390147

    ggCACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTc                                                                                                                                   <  1:1051381/140‑1 (MQ=255)

    ggCACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTc                                                                                                                                   <  2:2189240/140‑1 (MQ=255)

      cACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGa                                                                                                                                 <  1:1052051/140‑1 (MQ=255)

      cACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGa                                                                                                                                 <  1:803652/140‑1 (MQ=255)

      cACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGa                                                                                                                                 <  1:1665137/140‑1 (MQ=255)

      cACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGa                                                                                                                                 <  1:1597951/140‑1 (MQ=255)

        agTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAgg                                                                                                                               <  2:94617/139‑1 (MQ=255)

                atcTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGtt                                                                                                                       <  1:1264881/140‑1 (MQ=255)

                atcTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGtt                                                                                                                       >  2:1264881/1‑140 (MQ=255)

                atcTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGtt                                                                                                                       >  2:668645/1‑140 (MQ=255)

                  ctcACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTtgt                                                                                                                     >  1:1475343/1‑140 (MQ=255)

                   tcACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTtgtg                                                                                                                    >  2:2216256/1‑140 (MQ=255)

                   tcACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGGCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCTCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTtgtg                                                                                                                    >  1:843176/1‑140 (MQ=255)

                     aCGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGc                                                                                                                  >  2:1470819/1‑140 (MQ=255)

                       gCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCt                                                                                                                <  1:2216256/140‑1 (MQ=255)

                       gCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCt                                                                                                                >  2:1050182/1‑140 (MQ=255)

                       gCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCt                                                                                                                >  2:1546324/1‑140 (MQ=255)

                                cGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGc                                                                                                       <  2:407641/140‑1 (MQ=255)

                                cGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGc                                                                                                       <  1:1369432/140‑1 (MQ=255)

                                agTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGc                                                                                                       <  2:337968/139‑1 (MQ=255)

                                 gTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCa                                                                                                      <  1:1918023/140‑1 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  2:1707629/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  2:337297/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  1:1621311/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  1:1417347/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  2:1464268/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  1:748238/1‑140 (MQ=255)

                                     cACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGAt                                                                                                  >  1:697450/1‑140 (MQ=255)

                                           aTGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTAtc                                                                                            <  1:1367268/140‑1 (MQ=255)

                                            tgtgTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTAtct                                                                                           >  1:1213372/1‑140 (MQ=255)

                                                    cgGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGAt                                                                                   >  2:1224020/1‑140 (MQ=255)

                                                    cgGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGAt                                                                                   >  2:611620/1‑140 (MQ=255)

                                                       tggtAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCTAGTCTGCAGCTGCGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGAtttt                                                                                >  2:601758/1‑140 (MQ=255)

                                                        ggtAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTa                                                                               >  1:236940/1‑140 (MQ=255)

                                                        ggtAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTa                                                                               >  2:1442652/1‑140 (MQ=255)

                                                        ggtAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTa                                                                               >  1:1182474/1‑140 (MQ=255)

                                                        ggtAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTa                                                                               >  1:851814/1‑140 (MQ=255)

                                                              cACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAAc                                                                         <  2:1949702/140‑1 (MQ=255)

                                                                cgcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTg                                                                       <  1:617546/140‑1 (MQ=255)

                                                                 gcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTgg                                                                      >  1:1616673/1‑140 (MQ=255)

                                                                 gcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTgg                                                                      >  2:543135/1‑140 (MQ=255)

                                                                 gcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTgg                                                                      >  2:1611661/1‑140 (MQ=255)

                                                                 gcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTgg                                                                      <  2:1213372/140‑1 (MQ=255)

                                                                 gcgGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTgg                                                                      >  2:2011947/1‑140 (MQ=255)

                                                                      gagaGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGAt                                                                 >  2:1054855/1‑140 (MQ=255)

                                                                       agagGTAAGTGGTCACAAACGTCCCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATa                                                                <  2:843176/140‑1 (MQ=255)

                                                                            tAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGcc                                                           <  2:851814/140‑1 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAGCTGGCTGATAACGCCATCgg                                                      <  1:1387717/140‑1 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCgg                                                      <  2:236940/140‑1 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCgg                                                      <  2:155658/140‑1 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCgg                                                      <  2:1616673/140‑1 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCgg                                                      >  2:414644/1‑140 (MQ=255)

                                                                                 ggTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCgg                                                      <  1:649626/140‑1 (MQ=255)

                                                                                   tCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGGTGGTAACGCCATCggca                                                    >  1:1657542/1‑140 (MQ=255)

                                                                                   tCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggca                                                    >  2:668481/1‑140 (MQ=255)

                                                                                   tCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCACGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggca                                                    >  2:48017/1‑140 (MQ=255)

                                                                                    cacaAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcag                                                   >  1:156558/1‑140 (MQ=255)

                                                                                     acaAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGTTTTTACCCAACTGGCTGATAACGCCATCggcagg                                                  <  2:1475343/140‑1 (MQ=255)

                                                                                     acaAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcagg                                                  >  2:473979/1‑140 (MQ=255)

                                                                                      caAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcaggc                                                 <  1:1442652/140‑1 (MQ=255)

                                                                                      caAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcaggc                                                 <  1:1546324/140‑1 (MQ=255)

                                                                                      caAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcaggc                                                 <  1:668481/140‑1 (MQ=255)

                                                                                      aaaaCGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCggcaggc                                                 <  2:138302/139‑1 (MQ=255)

                                                                                       aaaCGTACCGTTGCGAAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGTCTGATAACGCCATCggcaggca                                                <  1:601758/140‑1 (MQ=255)

                                                                                        aaCGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCAt                                               >  1:1624530/1‑140 (MQ=255)

                                                                                        aaCGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCAt                                               <  1:519530/140‑1 (MQ=255)

                                                                                            tACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCAt                                               <  1:784791/136‑1 (MQ=255)

                                                                                            tACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCAt                                               >  2:784791/1‑136 (MQ=255)

                                                                                            tACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGAcc                                           <  1:473979/140‑1 (MQ=255)

                                                                                            tACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGAcc                                           <  1:1472336/140‑1 (MQ=255)

                                                                                            tACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTAACCAACTGGCTGATAACGCCATCGGCAGGGCTGAcc                                           >  2:443630/1‑140 (MQ=255)

                                                                                             aCCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCa                                          <  1:661128/140‑1 (MQ=255)

                                                                                             aCCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCa                                          >  1:1672245/1‑140 (MQ=255)

                                                                                               cGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGt                                        <  2:1322342/140‑1 (MQ=255)

                                                                                                 ttGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTAc                                      >  1:723354/1‑140 (MQ=255)

                                                                                                 ttGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTAc                                      >  2:140802/1‑140 (MQ=255)

                                                                                                    cGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACAtt                                   <  1:345896/140‑1 (MQ=255)

                                                                                                    cGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACAtt                                   <  1:1224020/140‑1 (MQ=255)

                                                                                                    cGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACAtt                                   <  1:887528/140‑1 (MQ=255)

                                                                                                    cGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACAtt                                   <  2:1621311/140‑1 (MQ=255)

                                                                                                     ggAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTc                                  >  1:1745336/1‑140 (MQ=255)

                                                                                                      gAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCg                                 >  2:760085/1‑140 (MQ=255)

                                                                                                        aCAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGa                               <  1:2011947/140‑1 (MQ=255)

                                                                                                         cAGGTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGAt                              >  2:178783/1‑140 (MQ=255)

                                                                                                            gTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGCTTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATTACCCGTACATTCGGATCgg                           >  2:738488/1‑140 (MQ=255)

                                                                                                            gTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCgg                           >  2:2119682/1‑140 (MQ=255)

                                                                                                            gTCCGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCgg                           >  1:1148309/1‑140 (MQ=255)

                                                                                                              ccGCCATCAGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTa                         <  1:1145347/140‑1 (MQ=255)

                                                                                                                      aGATAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTgg                 <  1:2119682/140‑1 (MQ=255)

                                                                                                                        aTAGTTGCCTGCCAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGc               >  2:2143995/1‑140 (MQ=255)

                                                                                                                              gcctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTTGGCGTACtt         >  2:1418656/1‑140 (MQ=255)

                                                                                                                              gcctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACtt         >  1:1238507/1‑140 (MQ=255)

                                                                                                                              gcctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACtt         >  1:762076/1‑140 (MQ=255)

                                                                                                                               cctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTc        >  1:1046525/1‑140 (MQ=255)

                                                                                                                                ctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCg       >  2:1039284/1‑140 (MQ=255)

                                                                                                                                ctgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCg       >  1:49245/1‑140 (MQ=255)

                                                                                                                                 tgccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATTACGCCATCGGCAGGCATGACCAGTTCATTCCGATCGGTTTTGATTGGGCGTACTTTGt      >  2:14645/1‑140 (MQ=255)

                                                                                                                                   ccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCGTCa    <  2:399431/140‑1 (MQ=255)

                                                                                                                                   ccAGCATGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCGTCa    >  1:1998013/1‑140 (MQ=255)

                                                                                                                                     agcatGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCGTCACg  <  1:1924295/140‑1 (MQ=255)

GCCCGGCACGTAGATCATCTCACGCAGAATACCGTTGCACGGCATGTGTACGCGGTGGTAGTCACGCGGGGAGAGGTAAGTGGTCACAAACGTACCGTTGCGGAACAGGTCCGCCATCAGATAGTTGCCTGCCAGCAGGGCTTCGAGGCTGTAGTTGTGGCCTTTGGCTTGCAGGATTTTATCTTCTTCGATTTTACCCAACTGGCTGATAACGCCATCGGCAGGCATGACCAGTACATTCGGATCGGTATCGATTGGGCGTACTTCGTCACG  >  NC_000913/4389875‑4390147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A