Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,961,560	C→A	P295Q (CCG→CAG)	rep →	ATP‑dependent DNA helicase Rep

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,961,560	0	C	A	100.0%	362.4 / NA	101	P295Q (CCG→CAG)	rep	ATP‑dependent DNA helicase Rep
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (45/56); total (45/56)

Only 100 of 102 total aligned reads displayed.

TGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACG  >  NC_000913/3961424‑3961696

tGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCa                                                                                                                                       <  2:716471/140‑1 (MQ=255)

tGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCa                                                                                                                                       >  2:518909/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  2:1337431/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  1:279767/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  1:218204/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  1:293753/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  1:996276/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  2:1214604/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  2:1267099/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  2:85041/1‑140 (MQ=255)

  gcgcGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACg                                                                                                                                     >  2:253546/1‑140 (MQ=255)

    gcgGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTc                                                                                                                                   <  1:414093/140‑1 (MQ=255)

      ggTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCtt                                                                                                                                 <  1:85041/140‑1 (MQ=255)

       gTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCttt                                                                                                                                >  2:1563072/1‑140 (MQ=255)

       gTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCttt                                                                                                                                >  1:377801/1‑140 (MQ=255)

        tGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTg                                                                                                                               >  1:1493547/1‑140 (MQ=255)

         gCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGa                                                                                                                              <  1:918114/140‑1 (MQ=255)

           aCGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGaaa                                                                                                                            <  2:1081544/140‑1 (MQ=255)

           aCGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGaaa                                                                                                                            <  2:93784/140‑1 (MQ=255)

           aCGTCAGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGaaa                                                                                                                            <  1:1280245/140‑1 (MQ=255)

              tCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGc                                                                                                                         <  1:1005382/140‑1 (MQ=255)

                cGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGt                                                                                                                       <  1:1267099/140‑1 (MQ=255)

                cGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGt                                                                                                                       <  1:1337431/140‑1 (MQ=255)

                  cAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  2:258893/140‑1 (MQ=255)

                  cAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  1:518909/140‑1 (MQ=255)

                  cAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  2:1504341/140‑1 (MQ=255)

                  cAAAACCCGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  1:1023308/140‑1 (MQ=255)

                  aaaaaCCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  1:267091/139‑1 (MQ=255)

                  aaaaaCCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCt                                                                                                                     <  2:88688/139‑1 (MQ=255)

                       ccTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTtct                                                                                                                <  1:253546/140‑1 (MQ=255)

                       ccTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTtct                                                                                                                <  1:1506163/140‑1 (MQ=255)

                          ggTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCg                                                                                                             <  2:1686975/140‑1 (MQ=255)

                           gTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGa                                                                                                            >  1:132307/1‑140 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  1:1214604/140‑1 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  1:915488/140‑1 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  2:279767/140‑1 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  1:958201/140‑1 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  2:803360/140‑1 (MQ=255)

                            tgctgcTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGaa                                                                                                           <  1:1418741/140‑1 (MQ=255)

                               tgctgAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTtct                                                                                                                <  2:652133/132‑1 (MQ=255)

                               tgctgAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTtct                                                                                                                >  1:652133/1‑132 (MQ=255)

                                 ctgAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTggg                                                                                                      >  1:1535296/1‑140 (MQ=255)

                                 ctgAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTggg                                                                                                      >  1:3287/1‑140 (MQ=255)

                                          gATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGgcgc                                                                                             <  2:502950/140‑1 (MQ=255)

                                           aTTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGcgcg                                                                                            >  2:1486741/1‑140 (MQ=255)

                                           aTTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGcgcg                                                                                            <  1:841089/140‑1 (MQ=255)

                                           aTTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGcgcg                                                                                            <  2:377801/140‑1 (MQ=255)

                                           aTTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGATCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCAAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGcgcg                                                                                            <  2:494677/140‑1 (MQ=255)

                                              ttCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAg                                                                                         <  2:950746/140‑1 (MQ=255)

                                               tCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGc                                                                                        <  2:985928/140‑1 (MQ=255)

                                               tCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGc                                                                                        <  2:652636/140‑1 (MQ=255)

                                               tCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGc                                                                                        >  2:115378/1‑140 (MQ=255)

                                                   gcgcTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTaaa                                                                                    <  2:3287/140‑1 (MQ=255)

                                                          aGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTa                                                                             <  1:115378/140‑1 (MQ=255)

                                                               aTTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAgcgc                                                                        <  1:1563072/140‑1 (MQ=255)

                                                                ttAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGcgcg                                                                       <  2:1128758/140‑1 (MQ=255)

                                                                   aGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAAt                                                                    >  2:853338/1‑140 (MQ=255)

                                                                   aGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAAt                                                                    <  2:1493547/140‑1 (MQ=255)

                                                                     cTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATaa                                                                  >  1:854093/1‑140 (MQ=255)

                                                                         aGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCTCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTTTGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACgaa                                                              >  1:945369/1‑140 (MQ=255)

                                                                         aGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACgaa                                                              <  2:293753/140‑1 (MQ=255)

                                                                           cAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACgaaga                                                            <  1:584619/140‑1 (MQ=255)

                                                                              aaCTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACa                                                         >  2:1471788/1‑140 (MQ=255)

                                                                                   tCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAgg                                                    >  2:1450627/1‑140 (MQ=255)

                                                                                   tCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAgg                                                    >  1:793922/1‑140 (MQ=255)

                                                                                        ctTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAg                                               >  2:409768/1‑140 (MQ=255)

                                                                                        ctTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAg                                               >  2:231539/1‑140 (MQ=255)

                                                                                          tCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATTAGGCTGAgcg                                             <  2:854093/140‑1 (MQ=255)

                                                                                          tCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAgcg                                             >  1:1159126/1‑140 (MQ=255)

                                                                                          tCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAgcg                                             >  2:1490945/1‑140 (MQ=255)

                                                                                           ccGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAgcgc                                            >  1:1451663/1‑140 (MQ=255)

                                                                                             gggCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGt                                          <  1:1486741/140‑1 (MQ=255)

                                                                                                  tATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTg                                     <  1:1337838/140‑1 (MQ=255)

                                                                                                  tATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTg                                     >  2:1337838/1‑140 (MQ=255)

                                                                                                   aTTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTgg                                    >  2:314880/1‑140 (MQ=255)

                                                                                                    ttCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGc                                   >  1:1149653/1‑140 (MQ=255)

                                                                                                    ttCTGAAAGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGc                                   >  1:1365113/1‑140 (MQ=255)

                                                                                                         aaaGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCt                              >  1:1569218/1‑140 (MQ=255)

                                                                                                         aaaGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCt                              <  2:945369/140‑1 (MQ=255)

                                                                                                         aaaGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCt                              >  2:1231072/1‑140 (MQ=255)

                                                                                                           aGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGa                            <  2:1365113/140‑1 (MQ=255)

                                                                                                           aGCGGCGAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGa                            <  2:218204/140‑1 (MQ=255)

                                                                                                           aGCGGCGAACATACTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGa                            <  2:1539384/140‑1 (MQ=255)

                                                                                                            gcggcgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGGACATGAGGCTGAGCGCGTTACTGGCGAGCTGAt                           >  2:1649106/1‑140 (MQ=255)

                                                                                                             cggcgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATc                          >  2:955796/1‑140 (MQ=255)

                                                                                                             cggcgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATc                          <  2:1535296/140‑1 (MQ=255)

                                                                                                              ggcgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCg                         >  1:742268/1‑140 (MQ=255)

                                                                                                               gcgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGc                        >  1:1154447/1‑140 (MQ=255)

                                                                                                                cgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGcc                       >  1:967399/1‑140 (MQ=255)

                                                                                                                cgAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGcc                       <  1:955796/140‑1 (MQ=255)

                                                                                                                 gAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGccc                      <  2:967399/140‑1 (MQ=255)

                                                                                                                 gAACATCCTGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGccc                      <  2:1149653/140‑1 (MQ=255)

                                                                                                                         tGATCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTc              <  1:853338/140‑1 (MQ=255)

                                                                                                                            tCGCCAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTc           >  1:1546910/1‑140 (MQ=255)

                                                                                                                                cAATAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATa       >  2:1684075/1‑140 (MQ=255)

                                                                                                                                  aTAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATaaa     <  1:1649106/140‑1 (MQ=255)

                                                                                                                                  aTAACCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATaaa     >  1:661230/1‑140 (MQ=255)

                                                                                                                                     aCCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACg  <  1:1450627/140‑1 (MQ=255)

                                                                                                                                     aCCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACg  <  2:970303/140‑1 (MQ=255)

                                                                                                                                     aCCAGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACg  <  1:1231072/140‑1 (MQ=255)

TGGCGCGGTGCACGTCCGCAAAACCTGGTGCTGCTGAGTCAGGATTTTCCGGCGCTGAAGGTGATTAAGCTTGAGCAGAACTATCGCTCTTCCGGGCGTATTCTGAAAGCGGCGAACATCCTGATCGCCAATAACCCGCACGTCTTTGAAAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACG  >  NC_000913/3961424‑3961696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A