Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,572,986 C→A G173C (GGC→TGC)  glgB ← 1,4‑alpha‑glucan branching enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,572,9860CA100.0% 308.8 / NA 86G173C (GGC→TGC) glgB1,4‑alpha‑glucan branching enzyme
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (50/36);  total (50/36)

AGACGCGGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCCGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTATCTGCATGC  >  NC_000913/3572849‑3573122
                                                                                                                                         |                                                                                                                                        
agaCGCGGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGc                                                                                                                                        <  1:1232852/140‑1 (MQ=255)
   cgcgGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGctct                                                                                                                                     >  1:569826/1‑140 (MQ=255)
   cgcgGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGctct                                                                                                                                     >  2:632606/1‑140 (MQ=255)
     cgGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGctctct                                                                                                                                   >  2:146965/1‑140 (MQ=255)
      ggTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCtt                                                                                                                                  >  1:705972/1‑140 (MQ=255)
      ggTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCtt                                                                                                                                  >  2:475968/1‑140 (MQ=255)
            cGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCa                                                                                                                            <  2:894478/140‑1 (MQ=255)
              ggCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAgg                                                                                                                          <  2:507862/140‑1 (MQ=255)
               gcgcATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGgc                                                                                                                         >  1:147879/1‑140 (MQ=255)
                  cATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCa                                                                                                                      >  2:1200059/1‑140 (MQ=255)
                          cTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGa                                                                                                              <  1:554343/140‑1 (MQ=255)
                                 ggCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGAc                                                                                                       <  1:592940/140‑1 (MQ=255)
                                  gCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGAcc                                                                                                      <  1:521455/140‑1 (MQ=255)
                                       aGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTccc                                                                                                 >  2:178709/1‑140 (MQ=255)
                                       aGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTccc                                                                                                 <  1:1223188/140‑1 (MQ=255)
                                       aGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTccc                                                                                                 <  1:79984/140‑1 (MQ=255)
                                        gggTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCCCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCa                                                                                                >  1:1145140/1‑140 (MQ=255)
                                            cGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCagtat                                                                                            >  2:1247635/1‑139 (MQ=255)
                                            cGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCagtag                                                                                            >  2:1241588/1‑140 (MQ=255)
                                            cGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCagtag                                                                                            >  1:365078/1‑140 (MQ=255)
                                            cGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCagtag                                                                                            >  1:208657/1‑140 (MQ=255)
                                            cGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCACAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCagtag                                                                                            >  1:278297/1‑140 (MQ=255)
                                                cTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGa                                                                                        <  1:1353834/140‑1 (MQ=255)
                                                   cAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAAtt                                                                                     >  1:30995/1‑140 (MQ=255)
                                                   cAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAAtt                                                                                     >  1:548876/1‑140 (MQ=255)
                                                         cAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCaa                                                                               <  1:1247635/140‑1 (MQ=255)
                                                         cAAATTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTCACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCACTCTTTACGCAGGCGCATCGGGTGACGGCGATCGTTCCAGTAGTTTAATTGACCaa                                                                               <  2:580031/140‑1 (MQ=255)
                                                           aGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAacc                                                                             >  1:388784/1‑140 (MQ=255)
                                                             ttGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAaccac                                                                           <  1:1200059/140‑1 (MQ=255)
                                                                    tGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGAcc                                                                    >  2:52915/1‑140 (MQ=255)
                                                                       cATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGa                                                                 <  2:1245408/140‑1 (MQ=255)
                                                                       cATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGa                                                                 <  1:475968/140‑1 (MQ=255)
                                                                              catcTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATC‑‑GTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGttt                                                        <  1:260046/140‑1 (MQ=255)
                                                                                tctcGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGttt                                                        >  1:790296/1‑140 (MQ=255)
                                                                                tctcGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGttt                                                        <  2:388784/140‑1 (MQ=255)
                                                                                   cGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGa                                                     >  2:526295/1‑140 (MQ=255)
                                                                                    gTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAg                                                    <  1:632606/140‑1 (MQ=255)
                                                                                        ttATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCca                                                <  1:871548/140‑1 (MQ=255)
                                                                                            agagCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagaca                                            >  1:175634/1‑140 (MQ=255)
                                                                                              agCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCGTCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagacaga                                          >  2:1073123/1‑140 (MQ=255)
                                                                                              agCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagacaga                                          >  1:622772/1‑140 (MQ=255)
                                                                                              agCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagacaga                                          >  1:778966/1‑140 (MQ=255)
                                                                                              agCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagacaga                                          >  1:132254/1‑140 (MQ=255)
                                                                                              agCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcagacaga                                          >  2:1216146/1‑140 (MQ=255)
                                                                                                cTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCTACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAgaga                                        >  1:1322969/1‑140 (MQ=255)
                                                                                                cTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCcacacagata                                        >  2:242850/1‑138 (MQ=255)
                                                                                                cTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAgaga                                        >  1:52405/1‑140 (MQ=255)
                                                                                                 tGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGaa                                       >  2:562829/1‑140 (MQ=255)
                                                                                                 tGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGaa                                       <  2:825032/140‑1 (MQ=255)
                                                                                                  gACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGaaa                                      >  1:543459/1‑140 (MQ=255)
                                                                                                  gACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGaaa                                      >  2:778695/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAGTTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  1:209986/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  2:771406/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  2:40766/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  2:767342/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  2:1157858/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  1:436961/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  2:848218/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  1:839491/1‑140 (MQ=255)
                                                                                                   aCCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAc                                     >  1:1251846/1‑140 (MQ=255)
                                                                                                     cGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAcgc                                   >  2:1137475/1‑140 (MQ=255)
                                                                                                      gTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAAcgcg                                  <  2:839491/140‑1 (MQ=255)
                                                                                                        tATGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTa                                >  2:557406/1‑140 (MQ=255)
                                                                                                          tGCGCCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTAcc                              >  1:938219/1‑140 (MQ=255)
                                                                                                            cgcCCCAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCtg                            <  1:1157858/140‑1 (MQ=255)
                                                                                                               cccAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGa                         >  2:65426/1‑140 (MQ=255)
                                                                                                                ccAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGAc                        <  1:745102/140‑1 (MQ=255)
                                                                                                                 cAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACg                       <  1:562829/140‑1 (MQ=255)
                                                                                                                 cAGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACg                       <  1:919295/140‑1 (MQ=255)
                                                                                                                 aaGGGATAAACAGTTCCCAGATGCAGCTCACTTTACGCAGGCTCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACg                       <  2:569826/139‑1 (MQ=255)
                                                                                                                  aGGGATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGc                      <  1:1216146/140‑1 (MQ=255)
                                                                                                                    ggATAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGcca                    <  1:280174/140‑1 (MQ=255)
                                                                                                                      aTAAACAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatc                  <  2:436961/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGCCCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  1:778695/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  1:369262/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  1:146965/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  2:30995/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  2:622772/140‑1 (MQ=255)
                                                                                                                        aaaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatcca                <  2:147879/140‑1 (MQ=255)
                                                                                                                         aaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatccat               >  1:100183/1‑140 (MQ=255)
                                                                                                                         aaCAGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGccatccat               <  1:1241588/140‑1 (MQ=255)
                                                                                                                            aGTTCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGt            <  2:1053923/140‑1 (MQ=255)
                                                                                                                              ttCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTAt          >  2:783874/1‑140 (MQ=255)
                                                                                                                              ttCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTAt          >  1:659322/1‑140 (MQ=255)
                                                                                                                              ttCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTAt          >  1:474786/1‑140 (MQ=255)
                                                                                                                               tCCCAGATGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTATc         >  2:1130165/1‑140 (MQ=255)
                                                                                                                                      tGCAGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTATCTGCATgc  <  1:557406/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
AGACGCGGTTTCCGGGCGCATTTGCGCTTCAAAGGCATAAGGGTCGGACTTCAGACGCAAGTTGCCATTGGCATCAATCATCTCGTATTTATAGAGCTGACCGTTATGCGCCCCAGGGATAAACAGTTCCCAGATGCCGCTCTCTTTACGCAGGCGCATCGGGTGACGGCGACCGTCCCAGTAGTTGAATTGCCCAACCACCGAGACCCGACGGGCGTTTGGAGCCCAGACAGAGAAACGCGTACCTGTGACGCCATCCATAGTATCTGCATGC  >  NC_000913/3572849‑3573122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A