Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,263,370 C→A A288S (GCC→TCC)  qorA ← putative quinone oxidoreductase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,263,3700CA97.9% 330.0 / ‑2.2 94A288S (GCC→TCC) qorAputative quinone oxidoreductase 1
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (44/48);  total (45/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACC  >  NC_000913/4263234‑4263505
                                                                                                                                        |                                                                                                                                       
aaGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAAt                                                                                                                                      >  2:1102443/1‑140 (MQ=255)
 aGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATc                                                                                                                                     >  2:76891/1‑140 (MQ=255)
 aGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATc                                                                                                                                     >  1:942897/1‑140 (MQ=255)
 aGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATc                                                                                                                                     <  2:218060/140‑1 (MQ=255)
    ccTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCaaa                                                                                                                                  <  2:253070/140‑1 (MQ=255)
    ccTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGATCGAAATCaaa                                                                                                                                  <  2:271220/140‑1 (MQ=255)
      tATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAaga                                                                                                                                >  2:93423/1‑140 (MQ=255)
      tATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCCTAATCACACCGCTGGAAATCAAaga                                                                                                                                >  2:328412/1‑140 (MQ=255)
         ttCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGaa                                                                                                                             <  1:1104655/140‑1 (MQ=255)
         ttCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGaa                                                                                                                             <  1:965531/140‑1 (MQ=255)
         ttCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGaa                                                                                                                             <  1:1349174/140‑1 (MQ=255)
              ttATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGtt                                                                                                                        <  2:616893/140‑1 (MQ=255)
              ttATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGtt                                                                                                                        >  2:414697/1‑140 (MQ=255)
              ttATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGtt                                                                                                                        <  2:963031/140‑1 (MQ=255)
                   gAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTa                                                                                                                   >  1:1377883/1‑140 (MQ=255)
                         gcagGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGcc                                                                                                             <  2:320534/140‑1 (MQ=255)
                          cagGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCt                                                                                                            <  2:906527/140‑1 (MQ=255)
                             gCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCgt                                                                                                         >  2:1063926/1‑139 (MQ=255)
                             gCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCgg                                                                                                         <  1:1102443/140‑1 (MQ=255)
                              cTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCTCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGt                                                                                                        >  2:108159/1‑140 (MQ=255)
                                       tGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctc                                                                                               >  1:964890/1‑140 (MQ=255)
                                       tGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctc                                                                                               >  1:213186/1‑140 (MQ=255)
                                       tGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctc                                                                                               >  2:398173/1‑140 (MQ=255)
                                       tGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctc                                                                                               >  1:621416/1‑140 (MQ=255)
                                       tGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctc                                                                                               >  1:567488/1‑140 (MQ=255)
                                          gTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcg                                                                                            <  1:142892/140‑1 (MQ=255)
                                          gTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcg                                                                                            <  2:942897/140‑1 (MQ=255)
                                           tCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcgc                                                                                           >  1:294766/1‑140 (MQ=255)
                                             gCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgt                                                                                         <  2:414151/140‑1 (MQ=255)
                                              cccGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtg                                                                                        >  2:277942/1‑140 (MQ=255)
                                              cccGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtg                                                                                        <  1:1038715/140‑1 (MQ=255)
                                              cccGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtg                                                                                        <  1:1063926/140‑1 (MQ=255)
                                              cccGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtg                                                                                        <  1:1190640/140‑1 (MQ=255)
                                                      tCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGAtata                                                                                >  2:1218881/1‑140 (MQ=255)
                                                       ccAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg                                                                               <  2:812920/140‑1 (MQ=255)
                                                       ccAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg                                                                               <  1:277942/140‑1 (MQ=255)
                                                       ccAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg                                                                               <  1:792099/140‑1 (MQ=255)
                                                       ccAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg                                                                               <  1:93423/140‑1 (MQ=255)
                                                       ccAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg                                                                               <  1:1139803/140‑1 (MQ=255)
                                                         aGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGcc                                                                             <  2:567488/140‑1 (MQ=255)
                                                         aGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGcc                                                                             <  1:272003/140‑1 (MQ=255)
                                                           aaTCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCCTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCtt                                                                           <  1:328412/140‑1 (MQ=255)
                                                             tctcATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGc                                                                         <  1:371774/140‑1 (MQ=255)
                                                                cATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGCCATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGACTTGCAgg                                                                      >  2:584776/1‑140 (MQ=255)
                                                                 aTGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCACGTGGTGATATAGCCTTGCAggg                                                                     <  2:81320/140‑1 (MQ=255)
                                                                     gcACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAgg                                                                 <  2:1379025/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  2:1004715/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  1:182471/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  1:1075520/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  2:342502/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  1:414697/140‑1 (MQ=255)
                                                                       aCGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATACCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc                                                               <  2:305740/140‑1 (MQ=255)
                                                                         gCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCgt                                                             <  2:527038/140‑1 (MQ=255)
                                                                         gCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCgt                                                             <  2:1377883/140‑1 (MQ=255)
                                                                           tGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCgtgt                                                           >  2:810056/1‑140 (MQ=255)
                                                                            gcgcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTc                                                          >  1:1050024/1‑140 (MQ=255)
                                                                             cgcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTca                                                         >  2:1128191/1‑140 (MQ=255)
                                                                             cgcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTca                                                         >  1:876551/1‑140 (MQ=255)
                                                                                 tCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATa                                                     <  2:876551/140‑1 (MQ=255)
                                                                                     tCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAAc                                                 <  2:1277371/140‑1 (MQ=255)
                                                                                     tCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAAc                                                 <  1:181675/140‑1 (MQ=255)
                                                                                     tCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAAc                                                 >  2:1250940/1‑140 (MQ=255)
                                                                                            atatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCtt                                          >  1:674569/1‑140 (MQ=255)
                                                                                            atatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCtt                                          >  1:1317687/1‑140 (MQ=255)
                                                                                            atatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCtt                                          >  1:1238929/1‑140 (MQ=255)
                                                                                            atatTTCTGCTGCTCGGCCACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCtt                                          >  2:56563/1‑140 (MQ=255)
                                                                                             tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCttt                                         >  2:1067546/1‑140 (MQ=255)
                                                                                              atTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCtttt                                        >  1:83428/1‑140 (MQ=255)
                                                                                                 tCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGAGTGTCACATACAACGAGCCTTTttga                                     <  2:969448/140‑1 (MQ=255)
                                                                                                   tgctgcTCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTttgatt                                   >  1:1063912/1‑140 (MQ=255)
                                                                                                     ctgctCGGCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTttgattga                                 >  1:1339428/1‑140 (MQ=255)
                                                                                                            gCGACATCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGcc                          <  2:621416/140‑1 (MQ=255)
                                                                                                                  tCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGcc                          <  1:507820/134‑1 (MQ=255)
                                                                                                                  tCGACCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGcc                          >  2:507820/1‑134 (MQ=255)
                                                                                                                     aCCTTAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTcac                 <  1:810056/140‑1 (MQ=255)
                                                                                                                         tAATCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCg             <  1:1448/140‑1 (MQ=255)
                                                                                                                           aTCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGt           <  1:108159/140‑1 (MQ=255)
                                                                                                                            tCACACCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTa          >  2:1101136/1‑140 (MQ=255)
                                                                                                                             cacaCCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTaa         <  2:674569/140‑1 (MQ=255)
                                                                                                                               cacCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAAc        >  1:448507/1‑139 (MQ=255)
                                                                                                                               cacCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAAc        <  2:448507/139‑1 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      >  2:1045624/1‑140 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      >  2:619653/1‑140 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      >  1:1256010/1‑140 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      <  2:1063912/140‑1 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      <  2:1246734/140‑1 (MQ=255)
                                                                                                                                acCGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCg      >  2:282812/1‑140 (MQ=255)
                                                                                                                                 ccGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGc     <  1:1218881/140‑1 (MQ=255)
                                                                                                                                 ccGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGc     >  1:723307/1‑140 (MQ=255)
                                                                                                                                 ccGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGGGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGc     >  2:1347347/1‑140 (MQ=255)
                                                                                                                                 ccGCTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTAGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGc     <  2:1275417/140‑1 (MQ=255)
                                                                                                                                    cTGGAAATCACAGAGAACAGTTTATTACTGGCCTCGGTTAATTCCTCCCGCGTGGCGATATATACTTGCAAGTAAGGGCTCGGCACATACAACGAGCCTTTTTGTTTGAGCATGCCTAAGTTCACACCGGTAACCGCAcc  >  2:466706/1‑140 (MQ=255)
                                                                                                                                    cTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCAcc  >  1:636714/1‑140 (MQ=255)
                                                                                                                                    cTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCAcc  >  1:640456/1‑140 (MQ=255)
                                                                                                                                    cTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCAcc  >  2:1182306/1‑140 (MQ=255)
                                                                                                                                    cTGGAAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGAGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCAcc  >  1:459625/1‑140 (MQ=255)
                                                                                                                                    cTGGAAATCAAAGAGAACAGCTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCAcc  >  1:614975/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AAGCCCTATTTCTTTTATGGAATCAGCAGGCTGGAACCTTGCGTCGCCCGGCTTTCCAGAATCTCATGCGCACGCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCGTGTCACATACAACGAGCCTTTTTGATTGAGAATGCCTAAGTTCACACCGGTAACCGCACC  >  NC_000913/4263234‑4263505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A