Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,279,650 G→T G391V (GGT→GTT)  ghxP → guanine/hypoxanthine transporter GhxP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,279,6500GT94.4% 230.3 / 3.6 73G391V (GGT→GTT) ghxPguanine/hypoxanthine transporter GhxP
Reads supporting (aligned to +/- strand):  ref base G (2/2);  new base T (28/40);  total (31/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

ATTCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTAC  >  NC_000913/4279517‑4279773
                                                                                                                                     |                                                                                                                           
aTTCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGt                                                                                                                       <  1:476221/140‑1 (MQ=255)
aTTCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGt                                                                                                                       <  2:229270/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGTGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:1116408/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:739520/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:1096655/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:381226/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:914164/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:1233966/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  1:452905/140‑1 (MQ=255)
  tCTGTTCCTCTCTCCGATCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTa                                                                                                                     <  2:771946/140‑1 (MQ=255)
    tGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACg                                                                                                                   <  1:80699/140‑1 (MQ=255)
     gTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACgg                                                                                                                  <  1:444369/140‑1 (MQ=255)
     gTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACgg                                                                                                                  <  1:231009/140‑1 (MQ=255)
      ttCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGTCTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGc                                                                                                                 <  2:341562/140‑1 (MQ=255)
      ttCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGc                                                                                                                 >  1:441525/1‑140 (MQ=255)
        ccTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTg                                                                                                               <  2:50757/140‑1 (MQ=255)
           ctctcCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTAt                                                                                                            >  1:138912/1‑140 (MQ=255)
              tcCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCa                                                                                                         <  1:670609/140‑1 (MQ=255)
              tcCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCa                                                                                                         <  1:602061/140‑1 (MQ=255)
              tcCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCa                                                                                                         <  2:1020888/140‑1 (MQ=255)
              tcCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTACTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTct                                                                                                         >  2:1134912/1‑139 (MQ=255)
                cGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATc                                                                                                       >  1:794316/1‑140 (MQ=255)
                   tctctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTg                                                                                                    <  1:311548/140‑1 (MQ=255)
                   tctctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTg                                                                                                    >  1:459004/1‑140 (MQ=255)
                   tctctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTg                                                                                                    <  1:1183141/140‑1 (MQ=255)
                    ctctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGc                                                                                                   <  1:1172108/140‑1 (MQ=255)
                      ctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTg                                                                                                 <  1:190090/140‑1 (MQ=255)
                      ctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTg                                                                                                 <  2:384124/140‑1 (MQ=255)
                      ctTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTg                                                                                                 <  1:693183/140‑1 (MQ=255)
                               ttCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAAc                                                                                        >  2:1303636/1‑140 (MQ=255)
                               ttCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAAc                                                                                        >  2:923643/1‑140 (MQ=255)
                               ttCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAAc                                                                                        >  1:1250086/1‑140 (MQ=255)
                                 ccGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAAGCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTTCGGTTGTTTTAATCCTGCTGACCTGTAatat                                                                                      >  2:37956/1‑140 (MQ=255)
                                     ggTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTa                                                                                  <  1:676244/140‑1 (MQ=255)
                                      gTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTaa                                                                                 <  1:1260835/140‑1 (MQ=255)
                                      gTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTaa                                                                                 <  1:290313/140‑1 (MQ=255)
                                       tATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAAc                                                                                >  1:830848/1‑140 (MQ=255)
                                         tGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAg                                                                              >  1:524084/1‑140 (MQ=255)
                                            aaCGGCTCCGGCGCTGATGTTCGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGca                                                                           <  1:539306/140‑1 (MQ=255)
                                              cGGCTCCGGCGCTGATGTACGTTGGACTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCCGTTCTGGTTACGGCTGTATTTGTCTTGCTGACCTTTTACATCTTGACAGGcatc                                                                         >  2:1079352/1‑140 (MQ=255)
                                                 cTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAg                                                                              <  1:774888/132‑1 (MQ=255)
                                                 cTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAg                                                                              >  2:774888/1‑132 (MQ=255)
                                                 cTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATg                                                                      >  1:78560/1‑140 (MQ=255)
                                                 cTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATg                                                                      >  1:187877/1‑140 (MQ=255)
                                                 cTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGATCTCGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGcatcatt                                                                      >  2:830014/1‑139 (MQ=255)
                                                   ccGGCGCTGATGTACGTTGTCCTGCTGATGCTGAGGAACGTGGCGAAAATGGAGTTTGCTGATATGGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTTACATGCATCATGAt                                                                    >  1:1296543/1‑140 (MQ=255)
                                                   ccGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGAt                                                                    >  2:791621/1‑140 (MQ=255)
                                                   ccGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGAt                                                                    >  2:1008433/1‑140 (MQ=255)
                                                         cTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCtt                                                              <  2:138912/140‑1 (MQ=255)
                                                         cTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCtt                                                              <  2:830848/140‑1 (MQ=255)
                                                          tGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGATACTGCTGTATTCATCTTGCTGACCTGTAACCTCGTAAACGGCATCATTATCGTCTTc                                                             >  2:571853/1‑140 (MQ=255)
                                                              gTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGa                                                         <  1:1008433/140‑1 (MQ=255)
                                                                 cGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGActc                                                      <  2:794316/140‑1 (MQ=255)
                                                                 cGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGActc                                                      <  1:1303636/140‑1 (MQ=255)
                                                                   ttGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTg                                                    <  2:589251/140‑1 (MQ=255)
                                                                      gCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGTTGACCTGTAACATCGTAACAGGCATCATGATCGGGTTCGCGACTTTGGtt                                                 >  2:20185/1‑139 (MQ=255)
                                                                      gCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTg                                                 >  1:101969/1‑140 (MQ=255)
                                                                      gCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTg                                                 >  1:3402/1‑140 (MQ=255)
                                                                       ccTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTTTTTATCGTTCTGACCTGTAACATCGTAAAAGGCATCTTGCTTGGCTTTGCGACACTGGTgt                                                >  2:1320474/1‑139 (MQ=255)
                                                                           ctgatgctgaGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTgt                                            >  2:1113496/1‑139 (MQ=255)
                                                                             gatgctgaGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGgtc                                          >  2:184486/1‑140 (MQ=255)
                                                                                     gCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGtt                                  >  2:747055/1‑140 (MQ=255)
                                                                                     gCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGtt                                  >  1:1289996/1‑140 (MQ=255)
                                                                                     gCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGtt                                  >  1:505625/1‑140 (MQ=255)
                                                                                     gCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGtt                                  >  2:1148014/1‑140 (MQ=255)
                                                                                      cAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGttt                                 <  1:37956/140‑1 (MQ=255)
                                                                                         cGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCg                              >  2:99340/1‑140 (MQ=255)
                                                                                         agTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCg                              <  2:78560/139‑1 (MQ=255)
                                                                                          gTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGGTTCCgg                             >  2:584615/1‑140 (MQ=255)
                                                                                             gCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGa                          <  1:184486/140‑1 (MQ=255)
                                                                                              cGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGaa                         >  1:728385/1‑140 (MQ=255)
                                                                                                  aaTCGACTTTGCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGgc                     <  1:923643/140‑1 (MQ=255)
                                                                                                            gCTGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGaa           <  2:1289996/140‑1 (MQ=255)
                                                                                                              tGATTTTGTTGATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACa         <  2:101969/140‑1 (MQ=255)
                                                                                                                    tgttgATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTa   <  1:210213/140‑1 (MQ=255)
                                                                                                                     gttgATGCGATGGCGGTTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTAc  >  1:548946/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                           
ATTCTGTTCCTCTCTCCGCTCTCTTACCTCGTTCCGGGGTATGCAACGGCTCCGGCGCTGATGTACGTTGGCCTGCTGATGCTGAGCAACGTGGCGAAAATCGACTTTGCTGATTTTGTTGATGCGATGGCGGGTCTGGTTACGGCTGTATTCATCGTGCTGACCTGTAACATCGTAACAGGCATCATGATCGGCTTCGCGACTCTGGTGATTGGTCGTCTGGTTTCCGGCGAATGGCGCAAGTTGAACATCGGTAC  >  NC_000913/4279517‑4279773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A