Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F48 I1 R1	55	131.7	4456318	99.2%	4420667	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,002,178	C→A	L612M (CTG→ATG)	xdhA →	putative xanthine dehydrogenase molybdenum‑binding subunit XdhA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,002,178	0	C	A	100.0%	492.3 / NA	137	L612M (CTG→ATG)	xdhA	putative xanthine dehydrogenase molybdenum‑binding subunit XdhA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (59/78); total (59/78)

Only 100 of 141 total aligned reads displayed.

CGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATCTGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTGGGCGCT  >  NC_000913/3002041‑3002314

cGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATg                                                                                                                                        >  2:2180779/1‑140 (MQ=255)

cGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATg                                                                                                                                        <  2:1560973/140‑1 (MQ=255)

 ggAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGa                                                                                                                                       <  1:1279235/140‑1 (MQ=255)

  gAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGAc                                                                                                                                      <  2:282119/140‑1 (MQ=255)

     gagCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGt                                                                                                                                   <  1:1784386/140‑1 (MQ=255)

     gagCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGt                                                                                                                                   <  2:778258/140‑1 (MQ=255)

     aagCCGTTAATGGCGTTAAAACATTTGGCGATGGACGCTTTCTACCCCCCTGAACACGGCGGGCAGCTCTCTGCTGAAGGCTCCATCAAA‑ACCACCGCGAACCCCCCGGCGGTTGGCTGTAACTTTGTTGATATGACGGt                                                                                                                                   <  2:948450/139‑1 (MQ=255)

        ccGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGa                                                                                                                                >  1:649872/1‑140 (MQ=255)

        ccGTTAATGTCGTTAAAAGATGTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCGGGTGAAAGCGCCATCAAA‑ACCACCACTAACCCGCCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGa                                                                                                                                >  2:2092451/1‑140 (MQ=255)

         cGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGt                                                                                                                                   <  1:54662/136‑1 (MQ=255)

         cGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGat                                                                                                                               >  1:2175436/1‑140 (MQ=255)

               tGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTgcg                                                                                                                         <  1:1096892/140‑1 (MQ=255)

                gTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTgcgc                                                                                                                        <  1:1653832/140‑1 (MQ=255)

                gTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTgcgc                                                                                                                        <  1:459898/140‑1 (MQ=255)

                gTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTgcgc                                                                                                                        <  1:459836/140‑1 (MQ=255)

                  cGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCtg                                                                                                                      >  2:1619169/1‑140 (MQ=255)

                    ttAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCtgtg                                                                                                                    >  2:1031108/1‑140 (MQ=255)

                    ttAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCtgtg                                                                                                                    >  2:1451073/1‑140 (MQ=255)

                     tAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGc                                                                                                                   <  1:1228409/140‑1 (MQ=255)

                      aaaaGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCa                                                                                                                  <  2:1916108/140‑1 (MQ=255)

                           aTTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTc                                                                                                             >  2:2007772/1‑140 (MQ=255)

                           aTTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTc                                                                                                             >  2:1506132/1‑140 (MQ=255)

                            tttGGCGATGGCCGCTTTCTACCACCCTGAACGCGGCGAGAACCTCTTTAAACAAAGACACATCAAACATCA‑CACTAACCCTCCGGTTTTTGGCTGTCCCTTTGTTTATATGACGTTCTACATTCCTCTGTCAAAAGTcg                                                                                                            <  2:2090226/140‑2 (MQ=255)

                              tGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCAcc                                                                                                          >  2:396678/1‑140 (MQ=255)

                               ggCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCa                                                                                                         >  2:2200828/1‑140 (MQ=255)

                                  gATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCa                                                                                                      <  1:1936592/140‑1 (MQ=255)

                                     ggACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAAcc                                                                                                   >  1:1925035/1‑140 (MQ=255)

                                            ttCTACCACCCTGAACGCGGCGGGCAGCTTTCTGCTGAAAGCTCCAACAAA‑ACCACCACCAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCt                                                                                            <  1:158008/140‑1 (MQ=255)

                                             tCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTc                                                                                           <  2:1707591/140‑1 (MQ=255)

                                                accaccCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAAc                                                                                        <  2:491049/140‑1 (MQ=255)

                                                accaccCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAAc                                                                                        <  1:1430923/140‑1 (MQ=255)

                                                accaccCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAAc                                                                                        <  1:1466942/140‑1 (MQ=255)

                                                accaccCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAAc                                                                                        <  1:632076/140‑1 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   <  2:236247/140‑1 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   <  2:106803/140‑1 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   <  2:1691428/140‑1 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   >  1:1823327/1‑140 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   <  1:1764067/140‑1 (MQ=255)

                                                     ccTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   >  2:1124120/1‑140 (MQ=255)

                                                      cTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCAt                                                                                  >  2:484694/1‑140 (MQ=255)

                                                       tGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   <  1:12347/138‑1 (MQ=255)

                                                       tGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCa                                                                                   >  2:12347/1‑138 (MQ=255)

                                                       tGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCAtt                                                                                 >  2:297442/1‑139 (MQ=255)

                                                       tGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATg                                                                                 >  1:2107712/1‑140 (MQ=255)

                                                       tGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATg                                                                                 >  2:1521718/1‑140 (MQ=255)

                                                         aaCGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGAt                                                                               >  2:1252319/1‑140 (MQ=255)

                                                         aaCGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGAt                                                                               >  2:150725/1‑140 (MQ=255)

                                                         aaCGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGGTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTTATGAt                                                                               >  2:498683/1‑140 (MQ=255)

                                                          aCGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGAtt                                                                              <  1:1031108/140‑1 (MQ=255)

                                                             cggcggGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAg                                                                           <  1:1619169/140‑1 (MQ=255)

                                                               gcggGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAggg                                                                         <  1:1940610/140‑1 (MQ=255)

                                                                 gggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCa                                                                       <  1:1124120/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCCTCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGTATCCTCAAAGTTCATGATTCAGGGCat                                                                      <  1:498683/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCat                                                                      <  2:1823327/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCat                                                                      <  1:1521718/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCat                                                                      <  2:2063294/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCat                                                                      <  2:1186948/140‑1 (MQ=255)

                                                                  ggCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCat                                                                      <  1:2200828/140‑1 (MQ=255)

                                                                     aGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATAtt                                                                   >  2:1913530/1‑140 (MQ=255)

                                                                       ctctctGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCt                                                                 <  1:154507/140‑1 (MQ=255)

                                                                             gctgAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATcc                                                           >  2:1897395/1‑140 (MQ=255)

                                                                                   aGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCActgct                                                     <  1:396678/140‑1 (MQ=255)

                                                                                   aGCTCCATCAAA‑ACCACCACTAACCCACCGGAGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCActgct                                                     <  1:1195278/140‑1 (MQ=255)

                                                                                      tCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGc                                                  >  2:573177/1‑140 (MQ=255)

                                                                                      tCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGc                                                  >  1:955711/1‑140 (MQ=255)

                                                                                       ccATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCa                                                 <  1:1913530/140‑1 (MQ=255)

                                                                                        cATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAg                                                <  1:1897395/140‑1 (MQ=255)

                                                                                        cATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAg                                                >  1:1182355/1‑140 (MQ=255)

                                                                                           aaaa‑aCCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAg                                             <  2:398010/139‑1 (MQ=255)

                                                                                                   accacTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACATTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGt                                      >  1:563787/1‑140 (MQ=255)

                                                                                                    ccacTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTa                                     >  1:836423/1‑140 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  1:1481091/140‑1 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                >  1:1681704/1‑140 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  1:150725/140‑1 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  2:651027/140‑1 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  1:2092451/140‑1 (MQ=255)

                                                                                                         aaCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  1:484694/140‑1 (MQ=255)

                                                                                                          aCCCACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcggc                               >  2:293608/1‑140 (MQ=255)

                                                                                                           cccACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                >  2:67314/1‑138 (MQ=255)

                                                                                                           cccACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACAcgg                                <  1:67314/138‑1 (MQ=255)

                                                                                                             cACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCgga                            <  1:1066356/140‑1 (MQ=255)

                                                                                                             cACCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCgga                            <  1:992011/140‑1 (MQ=255)

                                                                                                              aCCGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaa                           <  1:1214175/140‑1 (MQ=255)

                                                                                                               ccGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaat                          >  2:830572/1‑140 (MQ=255)

                                                                                                               ccGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaat                          >  1:2000041/1‑140 (MQ=255)

                                                                                                               ccGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaat                          >  1:1737369/1‑140 (MQ=255)

                                                                                                               ccGGCGTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaat                          >  2:699126/1‑140 (MQ=255)

                                                                                                                    gTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaatgggaa                     <  2:955711/140‑1 (MQ=255)

                                                                                                                    gTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaatgggaa                     >  2:1788621/1‑140 (MQ=255)

                                                                                                                    gTTTGGCTGTACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaatgggaa                     >  2:1080748/1‑140 (MQ=255)

                                                                                                                     tttGGCTATACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCggaatgggaat                    >  1:1294045/1‑140 (MQ=255)

                                                                                                                             tACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTg            >  2:1721353/1‑140 (MQ=255)

                                                                                                                             tACCTTTGTTGATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTg            >  1:848078/1‑140 (MQ=255)

                                                                                                                             tACCTTTGTTGATATGACGGACGATATTGCGCTGTGCAAAGTCACAATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCAttt            >  2:581529/1‑139 (MQ=255)

                                                                                                                                   tgttgATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACTGCGGAATGGGAATGGGCATTGGCTggg      >  2:2225160/1‑140 (MQ=255)

                                                                                                                                   tgttgATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTggg      >  1:2073526/1‑140 (MQ=255)

                                                                                                                                   tgttgATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTggg      >  2:1390823/1‑140 (MQ=255)

                                                                                                                                     ttgATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTGGgcg    <  2:1148216/140‑1 (MQ=255)

                                                                                                                                     ttgATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTGGgcg    <  1:1080748/140‑1 (MQ=255)

                                                                                                                                       gATATGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGTGGAATGGGAATGGGCATTGGCTGGGCGCt  <  2:2107712/140‑1 (MQ=255)

CGGAAGAGCCGTTAATGTCGTTAAAAGATTTGGCGATGGACGCTTTCTACCACCCTGAACGCGGCGGGCAGCTCTCTGCTGAAAGCTCCATCAAA‑ACCACCACTAACCCACCGGCGTTTGGCTGTACCTTTGTTGATCTGACGGTCGATATTGCGCTGTGCAAAGTCACCATCAACCGCATCCTCAACGTTCATGATTCAGGGCATATTCTTAATCCACTGCTGGCAGAAGGTCAGGTACACGGCGGAATGGGAATGGGCATTGGCTGGGCGCT  >  NC_000913/3002041‑3002314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A