Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F48 I1 R1 55 131.7 4456318 99.2% 4420667 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,242,301 C→A P338P (CCG→CCT)  uxaA ← D‑altronate dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,242,3010CA100.0% 333.8 / NA 94P338P (CCG→CCT) uxaAD‑altronate dehydratase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (36/58);  total (36/58)

GGCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATCGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGTCAGTAC  >  NC_000913/3242164‑3242435
                                                                                                                                         |                                                                                                                                      
ggCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAgg                                                                                                                                      >  1:1652387/1‑140 (MQ=255)
ggCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAgg                                                                                                                                      >  2:279372/1‑140 (MQ=255)
ggCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAgg                                                                                                                                      >  2:1432373/1‑140 (MQ=255)
 gCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGc                                                                                                                                     >  1:1639598/1‑140 (MQ=255)
 gCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGc                                                                                                                                     >  2:1234124/1‑140 (MQ=255)
      ttCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCATGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATc                                                                                                                                >  2:707277/1‑140 (MQ=255)
      ttCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATc                                                                                                                                <  1:1623049/140‑1 (MQ=255)
      ttCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATc                                                                                                                                >  2:1012044/1‑140 (MQ=255)
      ttCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATc                                                                                                                                >  2:1256469/1‑140 (MQ=255)
         aGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATg                                                                                                                             <  1:974207/140‑1 (MQ=255)
         aGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATg                                                                                                                             <  1:455739/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  2:1594524/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  2:1211394/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  2:1967420/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  1:2093874/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  1:1743469/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  2:991886/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  1:1011546/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  2:997228/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  1:1012044/140‑1 (MQ=255)
           aCGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATggg                                                                                                                           <  1:1411038/140‑1 (MQ=255)
             gCTCGCCGTAACGCAGCACGTCAACCACGGCGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCa                                                                                                                         <  1:1234124/140‑1 (MQ=255)
             gCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCa                                                                                                                         <  1:403665/140‑1 (MQ=255)
               tCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAAt                                                                                                                       >  1:515625/1‑140 (MQ=255)
                cGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCtata                                                                                                                      >  2:1602295/1‑140 (MQ=255)
                cGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATa                                                                                                                      <  1:994918/140‑1 (MQ=255)
                    gTAACGCAGCACGTCAGCCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAATTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGt                                                                                                                  <  1:707277/140‑1 (MQ=255)
                    gTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGt                                                                                                                  <  2:1982045/140‑1 (MQ=255)
                     tAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTa                                                                                                                 <  2:87639/140‑1 (MQ=255)
                     tAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTa                                                                                                                 <  2:1920831/140‑1 (MQ=255)
                     tAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTa                                                                                                                 <  2:1634402/140‑1 (MQ=255)
                     tAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTa                                                                                                                 <  2:1639598/140‑1 (MQ=255)
                          cagcaCGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGtt                                                                                                            <  2:1407300/140‑1 (MQ=255)
                            gcaCGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTg                                                                                                          <  2:1855189/140‑1 (MQ=255)
                            gcaCGACAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTg                                                                                                          <  2:1366266/140‑1 (MQ=255)
                             caCGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGa                                                                                                         <  1:1064412/140‑1 (MQ=255)
                             caCGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGa                                                                                                         >  2:416585/1‑140 (MQ=255)
                              aCGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGaa                                                                                                        <  1:1256469/140‑1 (MQ=255)
                                 tCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTc                                                                                                     <  1:279372/140‑1 (MQ=255)
                                  cAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCg                                                                                                    >  2:2154953/1‑140 (MQ=255)
                                  cAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCg                                                                                                    >  1:1950480/1‑140 (MQ=255)
                                   aaCCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGt                                                                                                   <  2:163079/140‑1 (MQ=255)
                                    aCCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGtt                                                                                                  <  1:89277/140‑1 (MQ=255)
                                    aCCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGtt                                                                                                  <  1:1712204/140‑1 (MQ=255)
                                           cgCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATg                                                                                           >  1:311880/1‑140 (MQ=255)
                                             cTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGt                                                                                         <  2:797404/140‑1 (MQ=255)
                                                      gCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGttt                                                                                >  2:1723097/1‑140 (MQ=255)
                                                            tGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCaaa                                                                          <  2:1950480/140‑1 (MQ=255)
                                                                  aaGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGc                                                                    <  2:1713134/139‑1 (MQ=255)
                                                                   aGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCt                                                                   >  1:808693/1‑140 (MQ=255)
                                                                     ccAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTtc                                                                 <  1:1723097/140‑1 (MQ=255)
                                                                        aGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTtcgtc                                                              >  2:1354798/1‑140 (MQ=255)
                                                                        aGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTtcgtc                                                              >  2:1108380/1‑140 (MQ=255)
                                                                        aGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTtcgtc                                                              >  1:1357371/1‑140 (MQ=255)
                                                                         gTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTtcgtcg                                                             >  2:298471/1‑140 (MQ=255)
                                                                          tGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATTATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTcgc                                                            >  1:1128887/1‑140 (MQ=255)
                                                                          tGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTcgc                                                            >  2:1482466/1‑140 (MQ=255)
                                                                                   ttCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGt                                                   <  1:298471/140‑1 (MQ=255)
                                                                                   ttCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGt                                                   <  1:416585/140‑1 (MQ=255)
                                                                                   ttCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGt                                                   >  2:1311981/1‑140 (MQ=255)
                                                                                   ttCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGt                                                   <  1:2154953/140‑1 (MQ=255)
                                                                                   ttCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGGTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGt                                                   <  1:834728/140‑1 (MQ=255)
                                                                                      cAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCa                                                >  2:1372314/1‑140 (MQ=255)
                                                                                      cAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCa                                                >  2:2158784/1‑140 (MQ=255)
                                                                                        gCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATc                                              <  2:1652387/140‑1 (MQ=255)
                                                                                           tggtgATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGc                                           >  2:1815656/1‑140 (MQ=255)
                                                                                           tggtgATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGc                                           >  2:2186670/1‑140 (MQ=255)
                                                                                                aTACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTg                                      >  1:938328/1‑140 (MQ=255)
                                                                                                   ccgcccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGctt                                   >  2:887031/1‑139 (MQ=255)
                                                                                                     gcccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTg                                 <  1:1432373/140‑1 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgc                                >  1:1570925/1‑140 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgc                                >  1:222516/1‑140 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgc                                >  1:1096175/1‑140 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgc                                >  2:1883459/1‑140 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgc                                >  2:688597/1‑140 (MQ=255)
                                                                                                      cccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGCGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGTTCTgc                                >  2:1365836/1‑140 (MQ=255)
                                                                                                       ccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgcg                               <  1:1815656/140‑1 (MQ=255)
                                                                                                       ccgcTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTgcg                               <  2:515625/140‑1 (MQ=255)
                                                                                                          cTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGCCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGct                                    <  2:1248456/132‑1 (MQ=255)
                                                                                                          cTTTGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGCCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGct                                    >  1:1248456/1‑132 (MQ=255)
                                                                                                           tttGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCaa                           >  2:1139969/1‑140 (MQ=255)
                                                                                                             tGTTCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAAc                         <  1:2158784/140‑1 (MQ=255)
                                                                                                               ttCCCCGGCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACAt                       <  1:2186670/140‑1 (MQ=255)
                                                                                                                     ggCGATGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCgt                 >  2:566932/1‑139 (MQ=255)
                                                                                                                         aTGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACt             <  2:1766563/140‑1 (MQ=255)
                                                                                                                         aTGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACt             <  1:566932/140‑1 (MQ=255)
                                                                                                                         aTGGGTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACt             >  2:684983/1‑140 (MQ=255)
                                                                                                                            ggTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCg          <  1:1372314/140‑1 (MQ=255)
                                                                                                                             gTTTTCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCgg         <  1:1883459/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:1602295/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:1354798/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:688597/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:684983/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:1311981/140‑1 (MQ=255)
                                                                                                                              ttttCATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGt        <  1:1031178/140‑1 (MQ=255)
                                                                                                                                  cATAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGTCAGt    <  1:1482466/140‑1 (MQ=255)
                                                                                                                                    tAGATAGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGTCAGTAc  <  1:1108380/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
GGCGTTTTCAGACGCTCGCCGTAACGCAGCACGTCAACCACGACGCTGGAACCCGCTTTCTGGGTACAGCCAAGTGATTTGTCTTCCAGCGTGGTGATACCGCCCGCTTTGTTCCCCGGCGATGGGTTTTCATAGATCGGCTGATCATGGGCAATAAAGTACTGTTTGAAGTCGTTGACCATGGTGACCAGTTTTTCAAACGTTGCTTCGTCGCGGCAATGGTCCATCAGCAACTGCTCTGCGCCAAACATCTCCGGCACTTCGGTCAGTAC  >  NC_000913/3242164‑3242435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A