Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F48 I1 R1 55 131.7 4456318 99.2% 4420667 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,410,940 C→A L221M (CTG→ATG)  dusB → tRNA‑dihydrouridine synthase B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,410,9400CA100.0% 387.8 / NA 108L221M (CTG→ATG) dusBtRNA‑dihydrouridine synthase B
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/56);  total (52/56)

Only 100 of 111 total aligned reads displayed.

TTTGTTCAATGGAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCCTGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGA  >  NC_000913/3410804‑3411073
                                                                                                                                        |                                                                                                                                      
tttgttCAATGGAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCAtga                                                                                                                                     >  2:813516/1‑140 (MQ=255)
      cAATGGAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAg                                                                                                                               >  1:1125569/1‑140 (MQ=255)
         tGGAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGcc                                                                                                                            >  2:2098772/1‑140 (MQ=255)
          ggAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcg                                                                                                                           >  1:649587/1‑140 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  1:2098772/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  1:332424/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  1:419465/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  1:813516/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:1661336/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  1:146223/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:1718237/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:1720344/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:1918312/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:371152/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:443036/140‑1 (MQ=255)
            agaAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCcgcg                                                                                                                         <  2:61730/140‑1 (MQ=255)
              aaGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCa                                                                                                                       >  2:1957520/1‑140 (MQ=255)
                 cTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCt                                                                                                                    >  1:1602972/1‑140 (MQ=255)
                  tGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTc                                                                                                                   <  2:218137/140‑1 (MQ=255)
                  tGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTc                                                                                                                   <  2:854039/140‑1 (MQ=255)
                     gTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAgg                                                                                                                >  2:557178/1‑140 (MQ=255)
                      tACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAggg                                                                                                               <  1:1394714/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  2:24690/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  2:465398/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  1:351099/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  2:724066/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  2:1714839/140‑1 (MQ=255)
                       aCGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑a                                                                                                             <  2:1602972/140‑1 (MQ=255)
                        cGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑aa                                                                                                            >  1:2175991/1‑140 (MQ=255)
                          aCAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAACTCAGGG‑AAGa                                                                                                          >  2:1983231/1‑140 (MQ=255)
                                ttCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTgg                                                                                                    >  2:1291106/1‑140 (MQ=255)
                                ttCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTgg                                                                                                    >  2:573031/1‑140 (MQ=255)
                                ttCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTgg                                                                                                    >  2:507756/1‑140 (MQ=255)
                                   gggCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATc                                                                                                 >  1:1193556/1‑140 (MQ=255)
                                        gTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCg                                                                                            >  2:1324885/1‑140 (MQ=255)
                                        gTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCg                                                                                            >  2:2054439/1‑140 (MQ=255)
                                        gTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCg                                                                                            >  1:2047502/1‑140 (MQ=255)
                                        gTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCg                                                                                            >  1:1264338/1‑140 (MQ=255)
                                        gTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCg                                                                                            >  2:501294/1‑140 (MQ=255)
                                          tAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCggg                                                                                          <  2:25754/140‑1 (MQ=255)
                                          tAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCggg                                                                                          >  1:1429804/1‑140 (MQ=255)
                                          tAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCggg                                                                                          >  2:1088125/1‑140 (MQ=255)
                                            aGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGaa                                                                                        <  2:1473228/140‑1 (MQ=255)
                                              cAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAAt                                                                                      <  2:1446996/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  2:1193556/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  1:1555476/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  2:1868681/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  1:1291106/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 >  1:847246/1‑140 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  2:2175991/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGc                                                                                 <  1:557178/140‑1 (MQ=255)
                                                   aGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGCAAATCCAGc                                                                                 <  2:1429804/140‑1 (MQ=255)
                                                      ttCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCAtt                                                                              >  1:2214454/1‑140 (MQ=255)
                                                       tCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCAGGAAATCCAGCAttt                                                                             >  2:739694/1‑139 (MQ=255)
                                                        ccATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTAt                                                                            <  1:800554/140‑1 (MQ=255)
                                                          aTTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCt                                                                          <  1:1610558/140‑1 (MQ=255)
                                                          aTTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCt                                                                          <  2:2214454/140‑1 (MQ=255)
                                                            tCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTgg                                                                        <  1:1324885/140‑1 (MQ=255)
                                                            tCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTgg                                                                        <  2:649587/140‑1 (MQ=255)
                                                             ccGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGa                                                                       <  2:1125569/140‑1 (MQ=255)
                                                               ggTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGaca                                                                     >  1:1697772/1‑140 (MQ=255)
                                                                    tCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTggg                                                                <  2:1572968/140‑1 (MQ=255)
                                                                             gCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTtgctg                                                       <  1:2054439/140‑1 (MQ=255)
                                                                                  aTTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTtgct                                                        >  1:787755/1‑134 (MQ=255)
                                                                                  aTTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTtgct                                                        <  2:787755/134‑1 (MQ=255)
                                                                                   ttACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCg                                                 <  1:501294/140‑1 (MQ=255)
                                                                                    tACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGc                                                <  1:507756/140‑1 (MQ=255)
                                                                                     aCTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCt                                               <  2:1264338/140‑1 (MQ=255)
                                                                                         aCCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCt                                           <  2:1697772/140‑1 (MQ=255)
                                                                                            cGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTg                                        >  1:398467/1‑140 (MQ=255)
                                                                                            cGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTg                                        >  1:87976/1‑140 (MQ=255)
                                                                                             gCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTgg                                       >  1:838412/1‑140 (MQ=255)
                                                                                              cTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGc                                      >  1:32591/1‑140 (MQ=255)
                                                                                              cTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGc                                      >  1:1310354/1‑140 (MQ=255)
                                                                                              cTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGc                                      >  2:1270341/1‑140 (MQ=255)
                                                                                               ttAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCa                                     <  1:1270341/140‑1 (MQ=255)
                                                                                                 aaaGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCaga                                   >  2:1766507/1‑140 (MQ=255)
                                                                                                      cAGAGCTGTGCTCGACCATACAAGGGCCGATGCCCTGAAGAAAGGGCGCGTAGCTGAGGGAAAGACCC‑GGAATTTTCGGGAAATCCAGCAATAACTGGAACCCGGGGAGGTTGTGCCCCCGCTGCCTTTGGCAGAGGTTa                              <  2:398467/140‑1 (MQ=255)
                                                                                                       agagCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑TAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTaa                             >  1:1310693/1‑140 (MQ=255)
                                                                                                         agCTGTGCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAgc                           >  1:2127978/1‑140 (MQ=255)
                                                                                                             gtgCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCgctt                       >  2:552364/1‑140 (MQ=255)
                                                                                                              tgCTCGACTATACAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCgcttg                      >  1:670253/1‑140 (MQ=255)
                                                                                                                      tataCAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTgcgc              <  1:170602/140‑1 (MQ=255)
                                                                                                                       ataCAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTgcgcg             <  1:2064217/140‑1 (MQ=255)
                                                                                                                        taCAGGGGCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTgcgcgc            >  1:594221/1‑140 (MQ=255)
                                                                                                                             gggCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGtt       >  1:297067/1‑140 (MQ=255)
                                                                                                                             gggCGGAGGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGtt       >  1:1448249/1‑140 (MQ=255)
                                                                                                                               gCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCg     >  2:1417776/1‑140 (MQ=255)
                                                                                                                               gCGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCg     >  2:1670215/1‑140 (MQ=255)
                                                                                                                                cGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCa           >  1:1669043/1‑133 (MQ=255)
                                                                                                                                cGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCgg    >  2:850664/1‑140 (MQ=255)
                                                                                                                                cGGATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCgg    >  2:58683/1‑140 (MQ=255)
                                                                                                                                 ggATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCggg   <  1:1957520/140‑1 (MQ=255)
                                                                                                                                  gATGCCATGCTGATAGGCCGCGCAGCTCAGGC‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGCGGAGTTGCTACCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGa  >  2:1623297/1‑140 (MQ=255)
                                                                                                                                  gATGCCATGATGGTAGGCCGCGTAGCTCAGGG‑CACACCATGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTCGCTGCCCCCGCTGCCTTTGGCAGAGGATACGCGCCTGCTATGCGCGCACGCTCgaga  >  2:1403180/1‑140 (MQ=255)
                                                                                                                                  gATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCggg   >  1:1902529/1‑139 (MQ=255)
                                                                                                                                  gATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCggg   <  2:1902529/139‑1 (MQ=255)
                                                                                                                                  gATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGa  >  1:934270/1‑140 (MQ=255)
                                                                                                                                  gATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGa  >  2:1326287/1‑140 (MQ=255)
                                                                                                                                  gATGCCATGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGa  >  1:1114402/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
TTTGTTCAATGGAGAAGCTGAGTACGACAGTATTCGGGCAGTTAAGCAGAAAGTTTCCATTCCGGTTATCGCGAATGGCGACATTACTGACCCGCTTAAAGCCAGAGCTGTGCTCGACTATACAGGGGCGGATGCCCTGATGATAGGCCGCGCAGCTCAGGG‑AAGACCCTGGATCTTTCGGGAAATCCAGCATTATCTGGACACTGGGGAGTTGCTGCCCCCGCTGCCTTTGGCAGAGGTTAAGCGCTTGCTTTGCGCGCACGTTCGGGA  >  NC_000913/3410804‑3411073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A