Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F48 I1 R1	55	131.7	4456318	99.2%	4420667	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,440,035	G→T	P394Q (CCG→CAG)	ytfL ←	putative inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,440,035	0	G	T	100.0%	357.4 / NA	100	P394Q (CCG→CAG)	ytfL	putative inner membrane protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (47/53); total (47/53)

AGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCGGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTT  >  NC_000913/4439899‑4440165

aGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGa                                                                                                                                 >  1:498490/1‑140 (MQ=255)

aGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGa                                                                                                                                 >  1:850796/1‑140 (MQ=255)

aGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGa                                                                                                                                 >  1:970748/1‑140 (MQ=255)

aGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGGAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGa                                                                                                                                 >  1:113228/1‑140 (MQ=255)

 gCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGAt                                                                                                                                >  1:1279731/1‑140 (MQ=255)

     cAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTa                                                                                                                            >  1:29713/1‑140 (MQ=255)

     cAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTa                                                                                                                            >  1:800234/1‑140 (MQ=255)

     cAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTa                                                                                                                            >  1:1527672/1‑140 (MQ=255)

      aGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           <  2:1933182/140‑1 (MQ=255)

      aGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           >  2:1025822/1‑140 (MQ=255)

      aGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           <  1:74017/140‑1 (MQ=255)

      aGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           <  2:800234/140‑1 (MQ=255)

      aGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           >  1:918425/1‑140 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACTAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          <  2:1869473/140‑1 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           >  2:1641583/1‑139 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTAc                                                                                                                           <  1:1641583/139‑1 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          <  2:29713/140‑1 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          <  2:443269/140‑1 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          >  2:1430013/1‑140 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCAACGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          <  2:113228/140‑1 (MQ=255)

       ggCAGTTTTGGCGAAAGGGCGGTGGCCTTGATGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACg                                                                                                                          <  1:535930/140‑1 (MQ=255)

        gCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACgc                                                                                                                         <  1:1430013/140‑1 (MQ=255)

        gCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACgc                                                                                                                         <  2:1004076/140‑1 (MQ=255)

              ttGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATa                                                                                                                   <  1:1356531/140‑1 (MQ=255)

              ttGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATa                                                                                                                   <  1:1511584/140‑1 (MQ=255)

                ggCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATaaa                                                                                                                 <  2:498490/140‑1 (MQ=255)

                ggCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATaaa                                                                                                                 <  2:850796/140‑1 (MQ=255)

                ggCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATaaa                                                                                                                 <  1:970386/140‑1 (MQ=255)

                ggCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATaaa                                                                                                                 <  1:1337476/140‑1 (MQ=255)

                  cGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAAca                                                                                                               >  2:1443897/1‑140 (MQ=255)

                     aaGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAAcatca                                                                                                            <  2:2062369/140‑1 (MQ=255)

                           ggTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAgc                                                                                                      >  1:1922543/1‑140 (MQ=255)

                                 cTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGa                                                                                                <  1:1299570/140‑1 (MQ=255)

                                 cTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGa                                                                                                <  2:918425/140‑1 (MQ=255)

                                   tGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGAt                                                                                               >  1:181895/1‑139 (MQ=255)

                                   tGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGAt                                                                                               <  2:181895/139‑1 (MQ=255)

                                   tGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATg                                                                                              >  1:1516018/1‑140 (MQ=255)

                                    gCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATgg                                                                                             <  2:60738/140‑1 (MQ=255)

                                          gATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGt                                                                                       <  2:1223723/140‑1 (MQ=255)

                                          gATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGt                                                                                       >  1:86107/1‑140 (MQ=255)

                                             ccGGGTCACCAGCAGCTGTTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGt                                                                                    <  2:1133696/140‑1 (MQ=255)

                                              cGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGtt                                                                                   >  1:734641/1‑140 (MQ=255)

                                                 gTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGcc                                                                                <  1:1443897/140‑1 (MQ=255)

                                                  tCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGccc                                                                               <  1:1025822/140‑1 (MQ=255)

                                                  tCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGccc                                                                               >  2:693962/1‑140 (MQ=255)

                                                    aCCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGa                                                                             <  2:1279731/140‑1 (MQ=255)

                                                    aCCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGa                                                                             <  2:335067/140‑1 (MQ=255)

                                                    aCCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGa                                                                             >  2:1577469/1‑140 (MQ=255)

                                                          agcTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCgg                                                                       >  2:414542/1‑140 (MQ=255)

                                                           gcTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCggg                                                                      <  2:1897928/140‑1 (MQ=255)

                                                           gcTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCggg                                                                      <  2:1527672/140‑1 (MQ=255)

                                                            cTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGa                                                                     >  1:547296/1‑140 (MQ=255)

                                                             tGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGaa                                                                    <  1:857847/140‑1 (MQ=255)

                                                             tGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGaa                                                                    <  2:86107/140‑1 (MQ=255)

                                                               gTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACt                                                                  <  1:693962/140‑1 (MQ=255)

                                                                tCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTc                                                                 >  1:2199669/1‑140 (MQ=255)

                                                                  gATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGt                                                               <  2:734641/140‑1 (MQ=255)

                                                                   aTGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTc                                                              <  1:1386783/140‑1 (MQ=255)

                                                                   aTGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTc                                                              <  2:970748/140‑1 (MQ=255)

                                                                    tGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCa                                                             <  1:386156/140‑1 (MQ=255)

                                                                         tAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATc                                                        >  1:1405055/1‑140 (MQ=255)

                                                                         tAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATc                                                        >  1:1737937/1‑140 (MQ=255)

                                                                            ttATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAg                                                     <  2:1516018/140‑1 (MQ=255)

                                                                              aTCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCa                                                   >  2:2109708/1‑140 (MQ=255)

                                                                              aTCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCa                                                   >  2:1330887/1‑140 (MQ=255)

                                                                              aTCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCa                                                   >  2:748613/1‑140 (MQ=255)

                                                                              aTCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCa                                                   >  1:1916385/1‑140 (MQ=255)

                                                                              aTCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCa                                                   >  2:1219474/1‑140 (MQ=255)

                                                                                   tatCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCAT‑AAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCa                                             >  1:579810/1‑140 (MQ=255)

                                                                                     tCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCAt                                            >  1:1803134/1‑140 (MQ=255)

                                                                                      ccaccaCTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATg                                           >  2:1014063/1‑140 (MQ=255)

                                                                                        accacTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAc                                         <  2:1922543/140‑1 (MQ=255)

                                                                                         ccacTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAct                                        >  2:1261741/1‑139 (MQ=255)

                                                                                         ccacTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAcg                                        >  1:151190/1‑140 (MQ=255)

                                                                                          cacTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAcgt                                       >  2:1164727/1‑140 (MQ=255)

                                                                                           acTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAcgtc                                      <  1:1577469/140‑1 (MQ=255)

                                                                                              tCAAATTTGTAGCCGGCAAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACgtcgtc                                   <  2:1532664/140‑1 (MQ=255)

                                                                                               cAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCa                                  >  2:405807/1‑140 (MQ=255)

                                                                                               cAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCa                                  >  2:1393474/1‑140 (MQ=255)

                                                                                                 aaTTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCTGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAAt                                <  1:1559704/140‑1 (MQ=255)

                                                                                                    ttGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAcgtc                                      <  1:1557993/131‑1 (MQ=255)

                                                                                                    ttGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGAcgtc                                      >  2:1557993/1‑131 (MQ=255)

                                                                                                       tAGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGt                          >  1:1169042/1‑140 (MQ=255)

                                                                                                        aGCCGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTg                         <  2:1803134/140‑1 (MQ=255)

                                                                                                          ccGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTgcc                       >  1:1763110/1‑140 (MQ=255)

                                                                                                           cGGCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTgccg                      <  1:1553794/140‑1 (MQ=255)

                                                                                                            ggCGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTgccgc                     >  1:2134986/1‑140 (MQ=255)

                                                                                                              cGAATTTCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGccgccg                   >  1:678898/1‑140 (MQ=255)

                                                                                                                   ttCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAAt              <  1:1711437/140‑1 (MQ=255)

                                                                                                                   ttCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAAt              <  1:642427/140‑1 (MQ=255)

                                                                                                                   ttCACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAAt              <  1:1593665/140‑1 (MQ=255)

                                                                                                                     cACCGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCa            <  1:405807/140‑1 (MQ=255)

                                                                                                                       ccGAATCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGc          <  2:2138431/140‑1 (MQ=255)

                                                                                                                          aaTCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCAt       <  1:614134/140‑1 (MQ=255)

                                                                                                                          aaTCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCAt       <  2:1169042/140‑1 (MQ=255)

                                                                                                                          aaTCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCAt       <  2:151190/140‑1 (MQ=255)

                                                                                                                           aTCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATg      >  1:1653450/1‑140 (MQ=255)

                                                                                                                            tCGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGa     >  2:1292316/1‑140 (MQ=255)

                                                                                                                             cGGTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAg    >  1:2157859/1‑140 (MQ=255)

                                                                                                                               gTGCGTTTCTGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGtt  >  2:582985/1‑140 (MQ=255)

AGCGTCAGGCAGTTTTGGCGAAAGGGCGGTGGCCTTGCTGTCGATCCGGGTCACCAGCAGCTGGTCGATGCGGTAGTTATCGATATCCACCACTTCAAATTTGTAGCCGGCGAATTTCACCGAATCGGTGCGTTTCGGGATCTTACGCAGCATAAACATCATAAAGCCGCCGATGGTTTCGTAGTTGCCCGACTGCGGGAACTCGTCAATATCCAGCACGCGCATGACGTCGTCAATTGGGGTGCCGCCGTCAATCAGCCATGAGTT  >  NC_000913/4439899‑4440165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A