Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F48 I1 R1	70	76.3	2572620	98.7%	2539175	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,551,460	G→T	S338R (AGC→AGA)	malP ←	maltodextrin phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,551,460	0	G	T	100.0%	252.3 / NA	71	S338R (AGC→AGA)	malP	maltodextrin phosphorylase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (41/30); total (41/30)

TCTACCAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTGCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTGCAGTT  >  NC_000913/3551323‑3551593

tctACCAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCt                                                                                                                                     >  2:525758/1‑140 (MQ=255)

    ccAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTa                                                                                                                                 >  2:390893/1‑140 (MQ=255)

    ccAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTa                                                                                                                                 >  1:560807/1‑140 (MQ=255)

    ccAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTa                                                                                                                                 >  1:35072/1‑140 (MQ=255)

        cGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATgg                                                                                                                             >  2:965800/1‑140 (MQ=255)

        cGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATgg                                                                                                                             >  1:695282/1‑140 (MQ=255)

        cGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATgg                                                                                                                             >  1:190945/1‑140 (MQ=255)

            ttAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCa                                                                                                                         <  2:1163578/140‑1 (MQ=255)

            ttAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCa                                                                                                                         >  1:1218438/1‑140 (MQ=255)

               aaGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGc                                                                                                                      <  2:151180/140‑1 (MQ=255)

                aGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCg                                                                                                                     <  2:695282/140‑1 (MQ=255)

                 gCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGt                                                                                                                    <  2:1139/140‑1 (MQ=255)

                      tATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATcc                                                                                                               <  1:1135539/140‑1 (MQ=255)

                         tAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGAATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAg                                                                                                            >  1:1018162/1‑140 (MQ=255)

                            tttCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTc                                                                                                         >  1:410495/1‑140 (MQ=255)

                                gTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCt                                                                                                     >  1:330081/1‑140 (MQ=255)

                                 ttAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACTAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTg                                                                                                    >  2:94226/1‑140 (MQ=255)

                                 ttAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTg                                                                                                    >  2:764303/1‑140 (MQ=255)

                                        tCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCa                                                                                             <  2:1218438/140‑1 (MQ=255)

                                         cTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCAt                                                                                            <  1:174150/140‑1 (MQ=255)

                                                 ggCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGc                                                                                    <  1:390893/140‑1 (MQ=255)

                                                   cgcgGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCAc                                                                                  >  1:194478/1‑140 (MQ=255)

                                                      ggCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCAcgcg                                                                               >  2:705152/1‑140 (MQ=255)

                                                      ggCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCAcgcg                                                                               >  2:664927/1‑140 (MQ=255)

                                                      ggCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCAcgcg                                                                               >  2:280198/1‑140 (MQ=255)

                                                          gTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCgcagc                                                                           <  2:4936/140‑1 (MQ=255)

                                                            aaGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGcagcag                                                                         >  2:208767/1‑140 (MQ=255)

                                                             aGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGt                                                                        >  1:492063/1‑140 (MQ=255)

                                                              gCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGtt                                                                       <  1:52459/140‑1 (MQ=255)

                                                                  ttCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTgg                                                                   >  1:641625/1‑140 (MQ=255)

                                                                  ttCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTgg                                                                   >  2:1247378/1‑140 (MQ=255)

                                                                     aCCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAAt                                                                >  1:1258896/1‑140 (MQ=255)

                                                                       cAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATcg                                                              <  2:43263/140‑1 (MQ=255)

                                                                       cAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATcg                                                              <  2:35072/140‑1 (MQ=255)

                                                                         gTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATcgcg                                                            <  1:965800/140‑1 (MQ=255)

                                                                            tCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATa                                                         >  2:62656/1‑140 (MQ=255)

                                                                              acaTCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGt                                                       <  2:492063/140‑1 (MQ=255)

                                                                              acaTCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGt                                                       <  2:560807/140‑1 (MQ=255)

                                                                              acaTCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGt                                                       <  2:1060534/140‑1 (MQ=255)

                                                                                   ccAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTtgggt                                                  >  2:299193/1‑140 (MQ=255)

                                                                                   ccAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTtgggt                                                  <  2:634458/140‑1 (MQ=255)

                                                                                    cAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTtgggtg                                                 >  2:850092/1‑140 (MQ=255)

                                                                                    cAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTtgggtg                                                 >  1:686727/1‑140 (MQ=255)

                                                                                    cAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTtgggtg                                                 >  1:578767/1‑140 (MQ=255)

                                                                                           ccAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCg                                          <  1:1247378/140‑1 (MQ=255)

                                                                                            cAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGt                                         >  2:682672/1‑140 (MQ=255)

                                                                                             aGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGtt                                        <  2:311051/140‑1 (MQ=255)

                                                                                              gcgcTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTc                                       <  1:94226/140‑1 (MQ=255)

                                                                                              gcgcTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTc                                       >  1:818599/1‑140 (MQ=255)

                                                                                               cgcTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCa                                      <  2:330081/140‑1 (MQ=255)

                                                                                                gcTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAg                                     <  2:1258896/140‑1 (MQ=255)

                                                                                                     tGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGaa                                <  1:62656/140‑1 (MQ=255)

                                                                                                      ggCATCAGGGTATGGTTGGTGTCAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAAt                               <  1:1073138/140‑1 (MQ=255)

                                                                                                       gCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATa                              <  2:410495/140‑1 (MQ=255)

                                                                                                         aTCAGGGTATGTTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAAc                            >  1:1082444/1‑140 (MQ=255)

                                                                                                           cAGGGTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACtt                          <  2:923419/140‑1 (MQ=255)

                                                                                                              ggTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGt                       >  1:523624/1‑140 (MQ=255)

                                                                                                               gTATGGTTGGTGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTa                      <  1:925863/140‑1 (MQ=255)

                                                                                                                       ggtGTAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCa              >  2:329362/1‑140 (MQ=255)

                                                                                                                        gtgtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAg             >  2:111963/1‑140 (MQ=255)

                                                                                                                        gtgtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAg             >  1:418813/1‑140 (MQ=255)

                                                                                                                        gtgtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAg             >  1:951428/1‑140 (MQ=255)

                                                                                                                        gtgtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAg             >  1:1106159/1‑140 (MQ=255)

                                                                                                                        gtgtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGGGTGTATCGTTCAGCTGAATAACTTCGTAATCCGCCat             >  2:497076/1‑139 (MQ=255)

                                                                                                                          gtAAGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGtt           >  1:401771/1‑140 (MQ=255)

                                                                                                                            aaGCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCg         >  1:312190/1‑140 (MQ=255)

                                                                                                                              gCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTg       <  2:190945/140‑1 (MQ=255)

                                                                                                                              gCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTg       <  1:664927/140‑1 (MQ=255)

                                                                                                                              gCGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTg       <  1:682672/140‑1 (MQ=255)

                                                                                                                               cGAAAGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTGc      >  1:187418/1‑140 (MQ=255)

                                                                                                                                   aGTTTTTCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTGCAGtt  >  2:443560/1‑140 (MQ=255)

TCTACCAGCGTTTTAAAGCGAGTATTAATTTCGTTAATAATCTGCATGTGGCGCGGCAGTAAGCCTTTCACCAGTTTCACATCCCAGCGTTCCAGCGCTTCTGGCATCAGGGTATGGTTGGTGTAAGCGAAAGTTTTGCTGGTAATGGCCCAGGCGTCATCCCAGCTCATCTGGTGCTCATCGATCAGCACGCGCAGCAGTTCTGGAATCGCGATAGTTGGGTGGGTATCGTTCAGCTGAATAACTTCGTAATCCGCCAGTTCGTGCAGTT  >  NC_000913/3551323‑3551593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A