Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F48 I1 R1 70 76.3 2572620 98.7% 2539175 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,146,311 C→A R18R (CGC→CGA)  pflC → putative pyruvate formate‑lyase 2 activating enzyme PflC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,146,3110CA100.0% 230.4 / NA 65R18R (CGC→CGA) pflCputative pyruvate formate‑lyase 2 activating enzyme PflC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (33/32);  total (33/32)

CGCCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAA  >  NC_000913/4146176‑4146446
                                                                                                                                       |                                                                                                                                       
cgcCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAgatg                                                                                                                                     >  1:760864/1‑140 (MQ=255)
     acaAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGAtgtg                                                                                                                                >  1:709776/1‑140 (MQ=255)
        aGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcg                                                                                                                             <  2:641020/140‑1 (MQ=255)
         gATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgc                                                                                                                            <  2:933837/140‑1 (MQ=255)
         gATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgc                                                                                                                            <  1:729193/140‑1 (MQ=255)
          aTTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgcg                                                                                                                           <  2:183560/140‑1 (MQ=255)
          aTTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgcg                                                                                                                           <  1:730989/140‑1 (MQ=255)
          aTTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgcg                                                                                                                           <  1:64380/140‑1 (MQ=255)
           ttATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgcgc                                                                                                                          <  1:522840/140‑1 (MQ=255)
           ttATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGgcgcgc                                                                                                                          <  1:1226232/140‑1 (MQ=255)
                 cGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTc                                                                                                                    <  1:1223087/140‑1 (MQ=255)
                 cGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTc                                                                                                                    <  2:609280/140‑1 (MQ=255)
                 cGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTc                                                                                                                    <  1:146252/140‑1 (MQ=255)
                   ggCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCaa                                                                                                                  >  2:806136/1‑140 (MQ=255)
                    gCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAAc                                                                                                                 >  2:528222/1‑140 (MQ=255)
                       ggtggtGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACAtt                                                                                                              <  2:741020/140‑1 (MQ=255)
                       ggtggtGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACAtt                                                                                                              <  1:464249/140‑1 (MQ=255)
                        gtggtgCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTc                                                                                                             <  2:889080/140‑1 (MQ=255)
                         tggtgCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCa                                                                                                            <  1:1193172/140‑1 (MQ=255)
                              cgcgTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGtt                                                                                                       >  1:1071750/1‑140 (MQ=255)
                              cgcgTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGtt                                                                                                       >  1:1286060/1‑140 (MQ=255)
                                  ttGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTc                                                                                                   >  2:919595/1‑140 (MQ=255)
                                   tGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCa                                                                                                  <  2:760101/140‑1 (MQ=255)
                                        gATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGaa                                                                                             >  2:273363/1‑140 (MQ=255)
                                           aCAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGa                                                                                          <  1:806136/140‑1 (MQ=255)
                                               cgcCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGc                                                                                      >  2:806521/1‑140 (MQ=255)
                                               cgcCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGc                                                                                      >  1:1283733/1‑140 (MQ=255)
                                                gcCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCg                                                                                     <  2:32754/140‑1 (MQ=255)
                                                  cttcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCACATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAg                                                                                   >  1:874850/1‑140 (MQ=255)
                                                    tcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAggg                                                                                 <  2:508673/140‑1 (MQ=255)
                                                    tcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAggg                                                                                 <  1:528222/140‑1 (MQ=255)
                                                    tcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAggg                                                                                 >  1:389039/1‑140 (MQ=255)
                                                    tcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAggg                                                                                 >  2:1125112/1‑140 (MQ=255)
                                                    tcttTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAggg                                                                                 >  2:922897/1‑140 (MQ=255)
                                                                     aaGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCt                                                                <  1:1261506/140‑1 (MQ=255)
                                                                           aTCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCTGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCTTACGGTGGTCCTTTTTa                                                          >  2:191479/1‑140 (MQ=255)
                                                                           aTCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTa                                                          >  2:1283072/1‑140 (MQ=255)
                                                                            tCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTaa                                                         >  1:577578/1‑140 (MQ=255)
                                                                            tCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTaa                                                         >  1:332715/1‑140 (MQ=255)
                                                                               aGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAgg                                                      <  1:806521/140‑1 (MQ=255)
                                                                                     aCATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTcc                                                >  1:363474/1‑140 (MQ=255)
                                                                                      catcatCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTATAGGCTGTCCg                                               >  1:1236343/1‑140 (MQ=255)
                                                                                      catcatCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCg                                               >  2:139592/1‑140 (MQ=255)
                                                                                      catcatCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCg                                               <  2:895333/140‑1 (MQ=255)
                                                                                       atcatcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGc                                              >  1:1144413/1‑140 (MQ=255)
                                                                                       atcatcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGGCTTTTTTAAAGGCTGTCCGc                                              >  1:750956/1‑140 (MQ=255)
                                                                                          atcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATc                                           <  2:936638/140‑1 (MQ=255)
                                                                                           tcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCt                                          >  2:893166/1‑140 (MQ=255)
                                                                                           tcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCt                                          >  2:795663/1‑140 (MQ=255)
                                                                                           tcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTCTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGAGGTCTTTTTTAAAGGCTGTCCGCATCt                                          >  1:421282/1‑140 (MQ=255)
                                                                                           tcCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGACGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCt                                          >  2:283463/1‑140 (MQ=255)
                                                                                               ccgGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGc                                      >  1:778453/1‑140 (MQ=255)
                                                                                               ccgGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGc                                      >  1:674621/1‑140 (MQ=255)
                                                                                                    cAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCgtg                                 <  2:602624/140‑1 (MQ=255)
                                                                                                     aGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCgtgg                                <  2:1144413/140‑1 (MQ=255)
                                                                                                     aGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCgtgg                                <  2:750956/140‑1 (MQ=255)
                                                                                                     aGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCgtgg                                <  2:709776/140‑1 (MQ=255)
                                                                                                          aTCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGc                           <  1:139592/140‑1 (MQ=255)
                                                                                                          aTCAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGc                           >  2:479039/1‑140 (MQ=255)
                                                                                                            cAGCTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTa                         >  1:964793/1‑140 (MQ=255)
                                                                                                               cTGTAACGTTGTGGAAACGCGCCGAGATGATGTGTCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATc                      <  1:715351/140‑1 (MQ=255)
                                                                                                               cTGTAACGTTGTGGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATc                      <  1:893166/140‑1 (MQ=255)
                                                                                                                        tgtgGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGa             >  2:1044649/1‑140 (MQ=255)
                                                                                                                         gtgGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAATGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGAt            >  1:1051853/1‑140 (MQ=255)
                                                                                                                         gtgGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGAt            >  1:539662/1‑140 (MQ=255)
                                                                                                                         gtgGAAACGCGCCGAGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGAt            <  1:796832/140‑1 (MQ=255)
                                                                                                                                   gccgaGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCaaa  <  1:795663/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CGCCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAA  >  NC_000913/4146176‑4146446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A