Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F48 I1 R1
|
70 |
76.3 |
2572620 |
98.7% |
2539175 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,279,334 |
C→A |
L286M (CTG→ATG) |
ghxP → |
guanine/hypoxanthine transporter GhxP |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,279,334 | 0 | C | A | 100.0%
| 213.7
/ NA
| 61 | L286M (CTG→ATG) | ghxP | guanine/hypoxanthine transporter GhxP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (26/35); total (26/35) |
ACTGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGCTGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCGAGTCTGCGGCGG > NC_000913/4279204‑4279454
|
aCTGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAg < 2:468069/140‑1 (MQ=255)
aCTGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTCGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAg > 1:548660/1‑140 (MQ=255)
tGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGAt < 2:125015/140‑1 (MQ=255)
tGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGAAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGAt > 1:1198172/1‑140 (MQ=255)
ttGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATggg < 2:1234313/140‑1 (MQ=255)
ggCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCa > 1:1132050/1‑140 (MQ=255)
cAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGa > 1:454778/1‑140 (MQ=255)
ccTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGatca > 1:1086010/1‑140 (MQ=255)
ccTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGAATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGatca > 1:75076/1‑140 (MQ=255)
tGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGatcatc > 1:978088/1‑140 (MQ=255)
gACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATTCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGa > 1:289233/1‑140 (MQ=255)
aTTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACgg < 1:1267790/140‑1 (MQ=255)
tATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTg > 2:1124127/1‑140 (MQ=255)
aTGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTgg > 1:802154/1‑140 (MQ=255)
aTGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTgg > 1:198415/1‑140 (MQ=255)
tGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTggg > 1:1284276/1‑140 (MQ=255)
tGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTggg < 1:521876/140‑1 (MQ=255)
gggCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGa < 1:750224/140‑1 (MQ=255)
gcgcgcTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGaaa < 1:1219728/140‑1 (MQ=255)
cTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcact < 2:1100822/140‑1 (MQ=255)
tGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactg < 2:1284276/140‑1 (MQ=255)
tGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactg < 2:637626/140‑1 (MQ=255)
tGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactg < 2:1222958/140‑1 (MQ=255)
aaTCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgac < 1:576949/140‑1 (MQ=255)
tCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgacca < 1:456145/140‑1 (MQ=255)
cTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgaccact < 1:1213108/140‑1 (MQ=255)
tGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgaccactg < 2:1282598/140‑1 (MQ=255)
tGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgaccactg < 2:103328/140‑1 (MQ=255)
tAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGcactgaccactgac < 2:918324/140‑1 (MQ=255)
tCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTcc > 1:1146076/1‑140 (MQ=255)
tCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTcc > 1:1200985/1‑140 (MQ=255)
cTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCAt > 1:1094299/1‑140 (MQ=255)
ccAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGag > 2:873203/1‑140 (MQ=255)
ccAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGag < 2:75076/140‑1 (MQ=255)
cAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGagc < 1:1040905/140‑1 (MQ=255)
gCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGagcagc > 1:584844/1‑140 (MQ=255)
gTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGt < 2:1253269/140‑1 (MQ=255)
ggCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTtct < 2:802154/140‑1 (MQ=255)
ggTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGcc < 1:1124127/140‑1 (MQ=255)
cGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTggtgggt < 1:772130/140‑1 (MQ=255)
taGTATTGGATGCCACCAGAACTATCCGTGCCGCGTCCGGCCAGACGAAGCTAATGAAGAAAGATGGGCAGGTAATCGACTGTGGTAAAAAACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCg > 2:1208201/2‑140 (MQ=255)
cAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGTCTGGTGGGTGCg > 2:415078/1‑140 (MQ=255)
cAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCg > 1:1166594/1‑140 (MQ=255)
tATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCt > 1:632554/1‑140 (MQ=255)
tGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCgg < 2:577825/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:127628/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:300560/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:430689/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:454778/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:1146076/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:1086010/140‑1 (MQ=255)
aTGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCa < 2:1094299/140‑1 (MQ=255)
tGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAg < 2:1132050/140‑1 (MQ=255)
gCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGc < 2:924237/140‑1 (MQ=255)
cACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCgg > 1:173668/1‑140 (MQ=255)
cACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCgg > 1:279425/1‑140 (MQ=255)
aCTATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTAGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACAt < 2:1198172/140‑1 (MQ=255)
tATCCGTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCg > 1:530091/1‑140 (MQ=255)
gTGCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCGAGTCt < 2:548660/140‑1 (MQ=255)
gCCGTCGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCGAGTCTgc > 1:160124/1‑140 (MQ=255)
cGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCGAGTCTgcggctg > 2:458501/1‑138 (MQ=255)
cGCCGGCCAGGCGAACCTGATGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGCATACATCGAGTCTGcggcgg > 2:495699/1‑140 (MQ=255)
|
ACTGATTGGCAGCCTGGACATTATGGGCGCGCTGAATCCTGTAGTCCTGCCAAGCGTTCTGGCGCTGGTGATGACGGCAGTATTTGATGCCACCGGAACTATCCGTGCCGTCGCCGGCCAGGCGAACCTGCTGGATAAAGATGGGCAGATCATCGACGGTGGGAAAGCACTGACCACTGACTCCATGAGCAGCGTTTTCTCTGGCCTGGTGGGTGCGGCTCCGGCAGCGGTATACATCGAGTCTGCGGCGG > NC_000913/4279204‑4279454
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A