Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F48 I1 R1 70 76.3 2572620 98.7% 2539175 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,328,168 G→T R345L (CGC→CTC)  crfC → clamp‑binding sister replication fork colocalization protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,328,1680GT100.0% 229.5 / NA 66R345L (CGC→CTC) crfCclamp‑binding sister replication fork colocalization protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (43/23);  total (43/23)

CAGGATCGTAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGC  >  NC_000913/4328038‑4328300
                                                                                                                                  |                                                                                                                                    
cAGGATCGTAACATTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGCATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCTGGCGCTCTATGAGtt                                                                                                                             >  2:413613/1‑140 (MQ=255)
 aGGATCGCAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCCGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCCGGCGCTCTATGAGTTa                                                                                                                            >  2:428808/1‑140 (MQ=255)
      cGTAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCcaa                                                                                                                       >  1:35312/1‑140 (MQ=255)
        tAACAGTGACGACGGCGACCAGGGGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGGATTACGCCACAGCAGATATTTCCGGTGTCGTCGCTGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCcaaca                                                                                                                     >  2:709418/1‑140 (MQ=255)
        tAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCcaaca                                                                                                                     >  1:1059288/1‑140 (MQ=255)
        tAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCcaaca                                                                                                                     >  1:1103486/1‑140 (MQ=255)
          aCAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCaacaac                                                                                                                   <  2:617864/140‑1 (MQ=255)
          aCAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCaacaac                                                                                                                   <  2:290655/140‑1 (MQ=255)
             gTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGt                                                                                                                >  2:306317/1‑140 (MQ=255)
             gTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGt                                                                                                                <  2:290814/140‑1 (MQ=255)
              tGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTa                                                                                                               >  1:849050/1‑140 (MQ=255)
              tGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTa                                                                                                               >  2:439712/1‑140 (MQ=255)
              tGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTa                                                                                                               >  2:1175883/1‑140 (MQ=255)
              tGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTa                                                                                                               >  2:236792/1‑140 (MQ=255)
              tGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTa                                                                                                               >  1:1079331/1‑140 (MQ=255)
                     gCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTacc                                                                                                        <  1:1102629/140‑1 (MQ=255)
                         aCCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCg                                                                                                    >  2:931035/1‑140 (MQ=255)
                         aCCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCg                                                                                                    <  2:764426/140‑1 (MQ=255)
                          ccAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGc                                                                                                   >  1:931283/1‑140 (MQ=255)
                             ggTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCag                                                                                                <  1:866798/140‑1 (MQ=255)
                                 cGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGca                                                                                            >  2:820103/1‑140 (MQ=255)
                                   ggCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGcaac                                                                                          >  1:623839/1‑140 (MQ=255)
                                        tGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGc                                                                                     >  1:879790/1‑140 (MQ=255)
                                         gATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCt                                                                                    <  2:1253377/140‑1 (MQ=255)
                                         gATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCt                                                                                    <  1:674399/140‑1 (MQ=255)
                                              ccGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTg                                                                               >  2:227226/1‑140 (MQ=255)
                                               cGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTgg                                                                              <  2:849050/140‑1 (MQ=255)
                                                gggACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCTGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGa                                                                             >  2:1013120/1‑140 (MQ=255)
                                                gggACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGa                                                                             <  1:952716/140‑1 (MQ=255)
                                                    cGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGAt                                                                         >  1:818778/1‑140 (MQ=255)
                                                    cGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGAt                                                                         >  1:727059/1‑140 (MQ=255)
                                                    cGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGCGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGAt                                                                         >  1:922783/1‑140 (MQ=255)
                                                         atgaAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGc                                                                    <  2:623839/140‑1 (MQ=255)
                                                              aGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATg                                                               <  1:900077/140‑1 (MQ=255)
                                                                   gTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCcgcg                                                          >  1:222037/1‑140 (MQ=255)
                                                                   gTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCcgcg                                                          >  1:962895/1‑140 (MQ=255)
                                                                         cGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGc                                                    <  2:35312/140‑1 (MQ=255)
                                                                         cGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTGAGCCAACAATGGTAAGGTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGc                                                    <  2:1103486/140‑1 (MQ=255)
                                                                          gtcacaGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGct                                                   >  2:1050567/3‑139 (MQ=255)
                                                                           ccACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAg                                                  >  2:268601/1‑140 (MQ=255)
                                                                           ccACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAg                                                  >  1:292195/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  1:225715/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  2:288399/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  2:275075/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  2:390963/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  1:567608/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  2:1015796/1‑140 (MQ=255)
                                                                              cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                               >  1:766643/1‑140 (MQ=255)
                                                                                    atatTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                         <  1:526687/140‑1 (MQ=255)
                                                                                    atatTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                         <  2:1059288/140‑1 (MQ=255)
                                                                                        ttCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCAt                                     <  1:984152/140‑1 (MQ=255)
                                                                                         tCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATg                                    <  1:352594/140‑1 (MQ=255)
                                                                                          ccGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGc                                   >  2:997817/1‑140 (MQ=255)
                                                                                           cGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGcc                                  >  2:1167842/1‑140 (MQ=255)
                                                                                           cGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGcc                                  >  1:102388/1‑140 (MQ=255)
                                                                                            ggTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCg                                 <  2:931283/140‑1 (MQ=255)
                                                                                             gtgtCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGa                                >  2:791292/1‑140 (MQ=255)
                                                                                                  gtcgATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTgg                           >  1:1070646/1‑140 (MQ=255)
                                                                                                   tcgATGTGGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGc                          <  1:439712/140‑1 (MQ=255)
                                                                                                        gtgGGGCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGAcc                     <  2:1079331/140‑1 (MQ=255)
                                                                                                          ggggCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTc                   >  2:239933/1‑140 (MQ=255)
                                                                                                          ggggCTACCTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTc                   >  2:1071381/1‑140 (MQ=255)
                                                                                                                 ccTGGCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACata            >  2:853031/1‑140 (MQ=255)
                                                                                                                     gCGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTACCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCg        >  1:902593/1‑140 (MQ=255)
                                                                                                                      cGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGt       >  1:986501/1‑140 (MQ=255)
                                                                                                                      cGAATCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGt       >  1:1023479/1‑140 (MQ=255)
                                                                                                                          tCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCAtg   >  2:1235478/1‑140 (MQ=255)
                                                                                                                          tCGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTACCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCAtg   <  2:902593/140‑1 (MQ=255)
                                                                                                                           cGGGCGCTCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCAtgc  <  2:727059/140‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                    
CAGGATCGTAACAGTGACGACGCCGACCAGGTGCGGGCACTGATTTCCGGGACGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGC  >  NC_000913/4328038‑4328300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A