Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F48 I1 R1	61	74.3	2613450	99.1%	2589928	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,332,509	C→A	R255L (CGG→CTG)	basS ←	sensory histidine kinase BasS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,332,509	0	C	A	100.0%	272.7 / NA	77	R255L (CGG→CTG)	basS	sensory histidine kinase BasS
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (40/37); total (40/37)

TTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTA  >  NC_000913/4332374‑4332641

ttACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATcagcag                                                                                                                                  <  1:1005134/140‑1 (MQ=255)

      tcatcaATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGt                                                                                                                            >  1:1098818/1‑140 (MQ=255)

        atcaATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGttt                                                                                                                          >  2:71469/1‑139 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGTTGTAACGATGGGCGTTTTCTACTAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  2:800766/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  1:583481/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  2:901816/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  2:675988/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  1:854606/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  2:304413/1‑140 (MQ=255)

                  ggTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTg                                                                                                                >  2:400091/1‑140 (MQ=255)

                    tCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGaa                                                                                                              >  1:1015840/1‑140 (MQ=255)

                    tCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGaa                                                                                                              >  1:518254/1‑140 (MQ=255)

                    tCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGaa                                                                                                              >  2:567382/1‑140 (MQ=255)

                    tCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGaa                                                                                                              >  1:1071305/1‑140 (MQ=255)

                       ttCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACgg                                                                                                           >  1:566129/1‑140 (MQ=255)

                        tCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGt                                                                                                          >  1:781855/1‑140 (MQ=255)

                         cATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGtt                                                                                                         >  2:187721/1‑139 (MQ=255)

                             ttCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGt                                                                                                     <  2:568275/140‑1 (MQ=255)

                                  cTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTcggcg                                                                                                >  2:998432/1‑140 (MQ=255)

                                     ccATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGgcggcg                                                                                             >  2:421206/1‑140 (MQ=255)

                                     ccATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGgcggcg                                                                                             >  2:934731/1‑140 (MQ=255)

                                             gCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTgg                                                                                     >  2:726002/1‑140 (MQ=255)

                                                     aacttcttGCAGCTTAATCATAATGTTGCTGCCTTTCGGGCTGTAACCATGGGCGTTTTCTACCAGGTTTCGCAATAACAACAGCAGCAGGGTTGCAGCACCCTGAACGGTGATGTCTGCGGCGCTCTCTGGCAATAGCa                                                                             <  2:99624/138‑1 (MQ=255)

                                                         tcttGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGt                                                                         >  2:374170/1‑140 (MQ=255)

                                                            tGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTATTCTACCAGGTTTCGCAATAACACCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTg                                                                      <  2:1223623/140‑1 (MQ=255)

                                                             gCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCATGGTTTGc                                                                     >  1:113820/1‑140 (MQ=255)

                                                             gCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGc                                                                     >  1:731714/1‑140 (MQ=255)

                                                                   tAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGc                                                               <  2:10583/140‑1 (MQ=255)

                                                                    aaTCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCt                                                              >  1:1262317/1‑140 (MQ=255)

                                                                        aTAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTc                                                          <  2:253599/140‑1 (MQ=255)

                                                                        aTAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTc                                                          <  1:726002/140‑1 (MQ=255)

                                                                          aaTGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGa                                                        <  2:854606/140‑1 (MQ=255)

                                                                           aTGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAg                                                       <  1:619447/140‑1 (MQ=255)

                                                                             gTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCATGGTTTGCTGTCGCTGGTCGAGCa                                                     <  2:113820/140‑1 (MQ=255)

                                                                             gTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCa                                                     <  2:791687/140‑1 (MQ=255)

                                                                             gTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCa                                                     <  1:495198/140‑1 (MQ=255)

                                                                               tgctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCCGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCAtt                                                   >  2:397592/1‑139 (MQ=255)

                                                                                gctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATgt                                                  >  2:90229/1‑139 (MQ=255)

                                                                                gctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATgg                                                  >  2:960431/1‑140 (MQ=255)

                                                                                gctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATgg                                                  >  1:614683/1‑140 (MQ=255)

                                                                                gctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATgg                                                  >  1:137299/1‑140 (MQ=255)

                                                                                gctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATgg                                                  >  2:737017/1‑140 (MQ=255)

                                                                                 ctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGt                                                 >  1:845649/1‑140 (MQ=255)

                                                                                 ctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGt                                                 >  1:1222370/1‑140 (MQ=255)

                                                                                  tgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTa                                                <  2:1071305/140‑1 (MQ=255)

                                                                                  tgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTa                                                <  1:737017/140‑1 (MQ=255)

                                                                                      ttGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGa                                            >  1:712314/1‑140 (MQ=255)

                                                                                       tGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAg                                           <  2:889620/140‑1 (MQ=255)

                                                                                            gCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGt                                      <  2:179973/140‑1 (MQ=255)

                                                                                            gCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGt                                      <  1:374170/140‑1 (MQ=255)

                                                                                                tAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATa                                  >  1:1249777/1‑140 (MQ=255)

                                                                                                tAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATa                                  >  1:249485/1‑140 (MQ=255)

                                                                                                tAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATa                                  >  1:214073/1‑140 (MQ=255)

                                                                                                tAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCCGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATa                                  <  1:397592/140‑1 (MQ=255)

                                                                                                 aaCGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATAc                                 <  2:731714/140‑1 (MQ=255)

                                                                                                   agATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGa                               <  2:614683/139‑1 (MQ=255)

                                                                                                    gATGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAg                              <  1:1284478/140‑1 (MQ=255)

                                                                                                      tGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAggg                            <  2:566129/140‑1 (MQ=255)

                                                                                                      tGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAggg                            <  1:71469/140‑1 (MQ=255)

                                                                                                      tGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAggg                            <  2:1171850/140‑1 (MQ=255)

                                                                                                      tGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAggg                            <  2:939105/140‑1 (MQ=255)

                                                                                                      tGGGCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCAGCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAggg                            >  1:1163906/1‑140 (MQ=255)

                                                                                                       gggCGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAgggg                           <  1:396082/140‑1 (MQ=255)

                                                                                                          cGTTTTCTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGACGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGgaga                        >  2:1160743/1‑140 (MQ=255)

                                                                                                                cTACCAGGTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACa                  <  1:934731/140‑1 (MQ=255)

                                                                                                                      ggTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTcc            <  2:214073/140‑1 (MQ=255)

                                                                                                                      ggTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTcc            <  1:998432/140‑1 (MQ=255)

                                                                                                                       gTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCca           >  2:1185346/1‑140 (MQ=255)

                                                                                                                       gTTTCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCca           <  2:1262317/140‑1 (MQ=255)

                                                                                                                        tttCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCcag          >  1:817881/1‑140 (MQ=255)

                                                                                                                        tttCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCcag          <  2:781855/140‑1 (MQ=255)

                                                                                                                          tCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCcagca        <  2:1222370/140‑1 (MQ=255)

                                                                                                                          tCGCAATAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCcagca        <  1:400091/140‑1 (MQ=255)

                                                                                                                              aaTAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGttt    <  1:1185346/140‑1 (MQ=255)

                                                                                                                                tAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCATTTTTa  <  2:845649/140‑1 (MQ=255)

                                                                                                                                tAACATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTa  <  2:137299/140‑1 (MQ=255)

                                                                                                                                aaaCATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTTGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTa  <  2:1015840/139‑1 (MQ=255)

                                                                                                                                aaaCATCAGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTa  <  2:1059283/139‑1 (MQ=255)

TTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTA  >  NC_000913/4332374‑4332641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A