Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,335,878	G→T	P385Q (CCG→CAG)	adiC ←	arginine:agmatine antiporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,335,878	0	G	T	100.0%	562.2 / NA	158	P385Q (CCG→CAG)	adiC	arginine:agmatine antiporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (77/81); total (77/81)

Only 100 of 162 total aligned reads displayed.

CCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCGGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAATGCTGCT  >  NC_000913/4335742‑4336014

ccGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCtggt                                                                                                                                       >  1:2148203/1‑139 (MQ=255)

ccGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGc                                                                                                                                       >  2:402207/1‑140 (MQ=255)

   gTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTg                                                                                                                                    <  1:2078255/140‑1 (MQ=255)

   gTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTg                                                                                                                                    <  1:1370746/140‑1 (MQ=255)

   gTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCAAATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTg                                                                                                                                    <  2:413251/140‑1 (MQ=255)

        aaTTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTa                                                                                                                               <  1:2313700/140‑1 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  1:750791/1‑140 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  1:19205/1‑140 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  1:1603879/1‑140 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  2:480099/1‑140 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  1:996272/1‑140 (MQ=255)

              gcgcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAg                                                                                                                         >  2:2148352/1‑140 (MQ=255)

                gcATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGtt                                                                                                                       >  2:1090667/1‑139 (MQ=255)

                 cATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGa                                                                                                                      >  2:540524/1‑140 (MQ=255)

                  aTACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGAc                                                                                                                     <  2:752830/140‑1 (MQ=255)

                         gCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTcc                                                                                                              >  2:2196510/1‑140 (MQ=255)

                          cGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCg                                                                                                             <  2:2470587/140‑1 (MQ=255)

                               atgaCCATCAGGGGGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGagcag                                                                                                        >  2:2014037/1‑140 (MQ=255)

                                  aCCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGcagcag                                                                                                     <  1:1438460/140‑1 (MQ=255)

                                  aCCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGcagcag                                                                                                     <  1:2126415/140‑1 (MQ=255)

                                   ccATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGt                                                                                                    <  2:2356907/140‑1 (MQ=255)

                                       cAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAAcg                                                                                                >  1:1876682/1‑140 (MQ=255)

                                         gggTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAAcgcc                                                                                              >  2:528535/1‑140 (MQ=255)

                                         gggTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAAcgcc                                                                                              >  1:1883734/1‑140 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           <  1:2376496/140‑1 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           <  2:318563/140‑1 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           <  1:402207/140‑1 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           <  1:528535/140‑1 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           >  1:1201650/1‑140 (MQ=255)

                                            tGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGca                                                                                           <  1:1153022/140‑1 (MQ=255)

                                             gACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGcac                                                                                          <  2:1604876/140‑1 (MQ=255)

                                             gACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGcac                                                                                          <  1:1866385/140‑1 (MQ=255)

                                             gACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGcac                                                                                          <  1:2148352/140‑1 (MQ=255)

                                              aCAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGGAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGcaca                                                                                         >  1:1722431/1‑140 (MQ=255)

                                                    gACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTa                                                                                   >  1:1245742/1‑140 (MQ=255)

                                                    gACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTa                                                                                   >  2:925126/1‑140 (MQ=255)

                                                     aCCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGCAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTaa                                                                                  >  1:24454/1‑140 (MQ=255)

                                                     aCCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTaa                                                                                  >  2:985124/1‑140 (MQ=255)

                                                      acacaTAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTaaa                                                                                 <  2:721182/139‑1 (MQ=255)

                                                       cacaTAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAg                                                                                >  1:1964241/1‑140 (MQ=255)

                                                        acaTAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGa                                                                               >  2:1601876/1‑140 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTCACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1902407/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  1:805842/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  1:925126/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  1:1388897/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  1:480099/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1481924/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1798041/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1883734/140‑1 (MQ=255)

                                                                tctTTCGCTCCGGACACCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTTCCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACTGGTGTAAAGACATGGCAc                                                                       <  1:1652246/140‑1 (MQ=255)

                                                                actTTAGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1349987/139‑1 (MQ=255)

                                                                 ctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAcc                                                                      >  2:275923/1‑140 (MQ=255)

                                                                 ctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAcc                                                                      >  1:889265/1‑140 (MQ=255)

                                                                 ctTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  1:2258308/139‑1 (MQ=255)

                                                                  tttCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCa                                                                     <  1:674539/140‑1 (MQ=255)

                                                                    tCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGgtgt                                                                                    <  2:1668523/123‑1 (MQ=255)

                                                                    tCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCAc                                                                       <  2:1337169/136‑1 (MQ=255)

                                                                    tCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAgt                                                                   >  1:738011/1‑140 (MQ=255)

                                                                    tCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAgt                                                                   >  1:1124048/1‑140 (MQ=255)

                                                                    tCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAgt                                                                   >  1:1149901/1‑140 (MQ=255)

                                                                       cTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTa                                                                >  2:2438382/1‑140 (MQ=255)

                                                                       cTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTa                                                                >  2:1528011/1‑140 (MQ=255)

                                                                               cccACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGAc                                                        <  2:1201650/140‑1 (MQ=255)

                                                                                  accacGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCga                                                     >  1:1988487/1‑140 (MQ=255)

                                                                                  accacGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCga                                                     >  2:114538/1‑140 (MQ=255)

                                                                                   acacGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCgag                                                    <  1:1090667/139‑1 (MQ=255)

                                                                                    cacGGCCCAGATGCAGTAAAAGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGAGTCCGAGCAGCATTAGCGCCGCACAGGTGTAAAGATATGGCACCAGTTTAAAGATGACCgaga                                                   <  1:946409/140‑1 (MQ=255)

                                                                                       ggCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACgg                                                >  1:348399/1‑140 (MQ=255)

                                                                                        gCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGga                                               <  1:275923/140‑1 (MQ=255)

                                                                                         cccAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGgaa                                              >  2:1612874/1‑140 (MQ=255)

                                                                                          ccAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGgaag                                             <  1:2438382/140‑1 (MQ=255)

                                                                                           cAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGgaaga                                            >  1:28973/1‑140 (MQ=255)

                                                                                             gATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGaaa                                          <  2:19205/140‑1 (MQ=255)

                                                                                              aTGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAAc                                         >  1:425083/1‑140 (MQ=255)

                                                                                                   gTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGAc                                    >  1:1830632/1‑140 (MQ=255)

                                                                                                   gTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGAc                                    <  1:1612874/140‑1 (MQ=255)

                                                                                                   gTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGAc                                    <  1:114538/140‑1 (MQ=255)

                                                                                                     agagGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCg                                  <  2:264627/140‑1 (MQ=255)

                                                                                                     agagGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCg                                  <  2:1245742/140‑1 (MQ=255)

                                                                                                       agGAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGaa                                <  2:1869684/140‑1 (MQ=255)

                                                                                                         gAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAAct                              >  1:183965/1‑140 (MQ=255)

                                                                                                         gAAGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAAct                              >  1:675082/1‑140 (MQ=255)

                                                                                                           aGGCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAActct                            >  1:1410640/1‑140 (MQ=255)

                                                                                                            ggCAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCtt                           >  1:1297031/1‑140 (MQ=255)

                                                                                                            ggCAATGGAAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCtt                           >  1:614464/1‑140 (MQ=255)

                                                                                                              cAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTg                         >  1:1006736/1‑140 (MQ=255)

                                                                                                              cAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTg                         >  2:1829715/1‑140 (MQ=255)

                                                                                                              cAATGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTg                         >  2:65893/1‑140 (MQ=255)

                                                                                                                aTGGTAGTAACTGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGTACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGt                       <  1:259118/140‑1 (MQ=255)

                                                                                                                           tGCCAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTg            >  1:3325/1‑140 (MQ=255)

                                                                                                                             ccAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTc                      >  2:1432019/1‑128 (MQ=255)

                                                                                                                             ccAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGaa          >  1:2499838/1‑140 (MQ=255)

                                                                                                                             ccAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGaa          >  2:1062146/1‑140 (MQ=255)

                                                                                                                             ccAGATATGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGaa          >  1:2082048/1‑140 (MQ=255)

                                                                                                                                 atatGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAAtgc      <  2:1124048/140‑1 (MQ=255)

                                                                                                                                   atGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAAtgctg    <  2:889265/140‑1 (MQ=255)

                                                                                                                                   atGCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAAtgctg    <  1:1062146/140‑1 (MQ=255)

                                                                                                                                     gCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAATgctgct  <  1:1528011/140‑1 (MQ=255)

                                                                                                                                     gCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAATgctgct  <  1:595109/140‑1 (MQ=255)

                                                                                                                                     gCCTGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAATgctgct  <  1:1829715/140‑1 (MQ=255)

CCGGTTGTAATTCAGCGCATACATGGCGGTGATGACCATCAGGGTGACAAATGACCACATAACCTCTTTCGCTCCGGACCCCACCACGGCCCAGATGCAGTAGAGGAAGGCAATGGTAGTAACTGCCAGATATGCCGGGCGTGCTTTACCAAAGTGACCGTGTCCGAGCAGCAGTAACGCCGCACAGGTGTAAAGATATGGCACCAGTGTAAAGATGACCGAGACGGAAGAAACCAGACCGAACTCTTTGGTCGCGTTTGGTGAAATGCTGCT  >  NC_000913/4335742‑4336014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A