Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F48 I1 R1 61 74.3 2613450 99.1% 2589928 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,493,330 C→A A8S (GCA→TCA)  idnO ← 5‑keto‑D‑gluconate 5‑reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,493,3300CA100.0% 366.2 / NA 102A8S (GCA→TCA) idnO5‑keto‑D‑gluconate 5‑reductase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (47/55);  total (47/55)

Only 100 of 103 total aligned reads displayed.

AGTTTTTCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCACTC  >  NC_000913/4493194‑4493465
                                                                                                                                        |                                                                                                                                       
aGTTTTTCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTGCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAg                                                                                                                                      <  2:209158/140‑1 (MQ=255)
aGTTTTTCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAg                                                                                                                                      <  1:655676/140‑1 (MQ=255)
 gTTTTTCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGt                                                                                                                                     >  2:1071221/1‑140 (MQ=255)
   ttttCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAg                                                                                                                                      <  2:831522/137‑1 (MQ=255)
   ttttCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAg                                                                                                                                      >  1:831522/1‑137 (MQ=255)
             cAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTCCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCg                                                                                                                         <  1:1193525/140‑1 (MQ=255)
               aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGtt                                                                                                                       <  2:55480/140‑1 (MQ=255)
               aGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGtt                                                                                                                       >  1:130895/1‑140 (MQ=255)
                 ttCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAGCCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCa                                                                                                                     <  2:926464/140‑1 (MQ=255)
                 ttCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCa                                                                                                                     <  1:263796/140‑1 (MQ=255)
                  tCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATc                                                                                                                          >  1:303548/1‑134 (MQ=255)
                  tCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATc                                                                                                                          <  2:303548/134‑1 (MQ=255)
                  tCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCAt                                                                                                                    <  1:858851/140‑1 (MQ=255)
                  tCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCAt                                                                                                                    <  1:1071221/140‑1 (MQ=255)
                      cgcgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGta                                                                                                                >  1:448985/1‑140 (MQ=255)
                      cgcgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGta                                                                                                                <  2:725916/140‑1 (MQ=255)
                       gcgTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGtat                                                                                                               >  1:1198091/1‑140 (MQ=255)
                         gTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGtatta                                                                                                             <  1:746920/140‑1 (MQ=255)
                              gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCt                                                                                                        <  2:92889/140‑1 (MQ=255)
                              gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCt                                                                                                        <  2:591602/140‑1 (MQ=255)
                              gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCt                                                                                                        <  1:960264/140‑1 (MQ=255)
                              gCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCt                                                                                                        <  1:590899/140‑1 (MQ=255)
                                     tatCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCtttatttt                                                                                                 >  2:1009959/1‑139 (MQ=255)
                                         aTTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTAtctc                                                                                             >  1:45245/1‑140 (MQ=255)
                                           taataaTTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCtt                                                                                           >  1:377050/1‑140 (MQ=255)
                                            aataatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTa                                                                                          >  2:801479/1‑140 (MQ=255)
                                            aataatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTa                                                                                          >  2:14124/1‑140 (MQ=255)
                                              taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGa                                                                                        <  1:1137506/140‑1 (MQ=255)
                                              taatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGa                                                                                        >  1:568301/1‑140 (MQ=255)
                                               aatTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaa                                                                                       >  1:626147/1‑140 (MQ=255)
                                                 ttattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaaa                                                                                      >  2:590580/1‑139 (MQ=255)
                                                 ttattTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGaaa                                                                                      <  1:590580/139‑1 (MQ=255)
                                                      tgtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGc                                                                                <  2:45245/140‑1 (MQ=255)
                                                      tgtgCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGc                                                                                <  2:295389/140‑1 (MQ=255)
                                                         gcgcCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTgg                                                                             >  1:266776/1‑140 (MQ=255)
                                                              atatTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACttt                                                                        <  2:568301/140‑1 (MQ=255)
                                                                    aCCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTtgctgc                                                                  >  2:767515/1‑140 (MQ=255)
                                                                     cccAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGcc                                                                 <  2:713918/140‑1 (MQ=255)
                                                                     accAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGcc                                                                 <  2:377050/139‑1 (MQ=255)
                                                                       cAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTg                                                               >  1:471166/1‑140 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGcc                                                                 >  2:1167431/1‑136 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGcc                                                                 <  1:1167431/136‑1 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTggt                                                             >  2:327307/1‑139 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTggt                                                             >  2:102719/1‑139 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTggg                                                             >  1:426511/1‑140 (MQ=255)
                                                                         ggCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTggg                                                             >  2:685970/1‑140 (MQ=255)
                                                                          gCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGt                                                            >  2:1231948/1‑140 (MQ=255)
                                                                          gCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGt                                                            >  2:1126355/1‑140 (MQ=255)
                                                                          gCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGt                                                            >  2:978989/1‑140 (MQ=255)
                                                                          gCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGt                                                            >  1:33803/1‑140 (MQ=255)
                                                                          gCCGGTTGCCAGTAAAAAGCCAATGCCCTATGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGt                                                            >  1:1154564/1‑140 (MQ=255)
                                                                                  ccAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCAc                                                    >  1:1190537/1‑140 (MQ=255)
                                                                                    aGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCg                                                  >  1:851979/1‑140 (MQ=255)
                                                                                          aaGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGaaa                                            <  1:418634/140‑1 (MQ=255)
                                                                                              cAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTa                                        <  2:448985/140‑1 (MQ=255)
                                                                                              aaaTGCCCTGTGCTTAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTa                                        <  2:744891/139‑1 (MQ=255)
                                                                                                aTGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAgc                                      >  1:653283/1‑140 (MQ=255)
                                                                                                  gCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAgcgc                                    <  2:33803/140‑1 (MQ=255)
                                                                                                   cccTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGcc                                   <  1:102719/140‑1 (MQ=255)
                                                                                                     cTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGTGTTTTATCACCGGCGAAACGTAGCGCctc                                 >  2:704659/1‑140 (MQ=255)
                                                                                                        tgCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTc                              >  1:1261520/1‑140 (MQ=255)
                                                                                                        tgCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTc                              <  2:1198091/140‑1 (MQ=255)
                                                                                                        tgCTGAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTc                              >  1:564432/1‑140 (MQ=255)
                                                                                                            gAACCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAgg                          <  2:851979/140‑1 (MQ=255)
                                                                                                             aaCCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGt                         <  2:426511/140‑1 (MQ=255)
                                                                                                             aaCCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGt                         >  2:229714/1‑140 (MQ=255)
                                                                                                             aaCCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTACTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGt                         <  2:769101/140‑1 (MQ=255)
                                                                                                              aCCGGTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTc                        <  2:1045685/140‑1 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGTTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  1:421178/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCtgtg                    >  1:809807/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  1:229879/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  2:1067855/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  1:917629/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  2:86507/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  1:811747/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    <  2:1190537/140‑1 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    <  2:653283/140‑1 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  2:189013/1‑140 (MQ=255)
                                                                                                                  gTAATCAAGATATTTTTTCCTGACAGAGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTg                    >  2:313237/1‑140 (MQ=255)
                                                                                                                     aTCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAg                 <  2:567985/140‑1 (MQ=255)
                                                                                                                     aTCAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAg                 <  1:1231948/140‑1 (MQ=255)
                                                                                                                       cAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAggg               <  1:202349/140‑1 (MQ=255)
                                                                                                                       cAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAggg               <  1:14124/140‑1 (MQ=255)
                                                                                                                       cAAGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAggg               <  2:257336/140‑1 (MQ=255)
                                                                                                                       aaaGATATTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAggg               <  2:160151/139‑1 (MQ=255)
                                                                                                                            tatTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATAtt          <  1:412260/140‑1 (MQ=255)
                                                                                                                            tatTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATAtt          <  2:130895/140‑1 (MQ=255)
                                                                                                                            tatTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATAtt          <  2:1287320/140‑1 (MQ=255)
                                                                                                                             atTTTTTCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTc         >  1:458917/1‑140 (MQ=255)
                                                                                                                              ttttttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCa        <  2:1105232/140‑1 (MQ=255)
                                                                                                                                 tttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCa     <  2:57189/140‑1 (MQ=255)
                                                                                                                                 tttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCa     <  1:685970/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  1:1126355/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  1:189013/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  2:266776/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  1:801479/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  1:417897/140‑1 (MQ=255)
                                                                                                                                  ttCCTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCAc    <  2:471166/140‑1 (MQ=255)
                                                                                                                                    ccTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCACTc  >  2:305884/1‑140 (MQ=255)
                                                                                                                                    ccTGACAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCACTc  >  2:321717/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AGTTTTTCTACAGCAAGTTCTGCGCGTTCGGCAGTAATATCATTAATAATTATTTGTGCGCCATATTTACCCAGGCCGGTTGCCAGTAAAAAGCCAATGCCCTGTGCTGAACCGGTAATCAAGATATTTTTTCCTGCCAGTGAAAATAGATCGTTCATTGTATTATTCCTTTATTTATCTCTTAGAAAACAAGCTGGACTTTTGCTGCCTGGGTTTTATCACCGGCGAAACGTAGCGCCTCTTCCAGGTCAGTGAAGGGATATTCAGCACTC  >  NC_000913/4493194‑4493465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A