Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,494,056	C→A	M117I (ATG→ATT)	idnD ←	L‑idonate 5‑dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,494,056	0	C	A	100.0%	585.6 / NA	161	M117I (ATG→ATT)	idnD	L‑idonate 5‑dehydrogenase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (72/89); total (72/89)

Only 100 of 163 total aligned reads displayed.

CGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATACATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCTATGAA  >  NC_000913/4493923‑4494192

cGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACTTGGTCGGCAGCAGTGGACGGGTAAAGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCa                                                                                                                                    >  2:1687605/1‑140 (MQ=255)

cGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCa                                                                                                                                    >  2:1979568/1‑140 (MQ=255)

cGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCa                                                                                                                                    >  1:605886/1‑140 (MQ=255)

cGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAAACACCATCAACATGAGGGAAATAAATGGCa                                                                                                                                    >  2:1828762/1‑140 (MQ=255)

  gCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACt                                                                                                                                  >  1:2527500/1‑140 (MQ=255)

   cATGAATCGCGACGGCTATAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTg                                                                                                                                 >  1:2366633/1‑140 (MQ=255)

   cATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTg                                                                                                                                 <  1:200114/140‑1 (MQ=255)

   cATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTg                                                                                                                                 >  2:1142234/1‑140 (MQ=255)

   aaTGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTg                                                                                                                                 <  2:1517592/139‑1 (MQ=255)

     tGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGcc                                                                                                                               >  2:1745319/1‑140 (MQ=255)

     tGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGcc                                                                                                                               >  1:2404794/1‑140 (MQ=255)

     tGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGcc                                                                                                                               >  1:20241/1‑140 (MQ=255)

     tGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGcc                                                                                                                               >  2:1349503/1‑140 (MQ=255)

     tGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGcc                                                                                                                               >  2:1271957/1‑140 (MQ=255)

      gAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCa                                                                                                                              >  2:385116/1‑140 (MQ=255)

         tCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCaaaa                                                                                                                           <  1:1518485/140‑1 (MQ=255)

         tCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCaaaa                                                                                                                           <  1:1212577/140‑1 (MQ=255)

           gcgACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCaaaaaa                                                                                                                         >  1:2470151/1‑140 (MQ=255)

             gACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAAc                                                                                                                       >  1:807950/1‑140 (MQ=255)

             gACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAAc                                                                                                                       >  2:1559647/1‑140 (MQ=255)

              aCGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACg                                                                                                                      <  1:1081452/140‑1 (MQ=255)

              aCGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACg                                                                                                                      <  2:632584/140‑1 (MQ=255)

              aCGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACg                                                                                                                      <  2:752502/140‑1 (MQ=255)

                ggCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCa                                                                                                                    <  1:1142234/140‑1 (MQ=255)

                ggCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCa                                                                                                                    <  2:288078/140‑1 (MQ=255)

                ggCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCa                                                                                                                    <  1:2453325/140‑1 (MQ=255)

                ggCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACAGGTAAAACCACAATCAACATGAGGGAAATAAAAGGCACTGCCAAAAAAACGCa                                                                                                                    <  2:847135/140‑1 (MQ=255)

                ggCTAAAGGTTCGGCAAAAGCCATAACCATTTCGTCAGCTTTGGCCGGACAAGGGACACATTGCGACGTTTCGACCATTTTACAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAACAAACGCa                                                                                                                    <  2:2380173/140‑1 (MQ=255)

                agCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCa                                                                                                                    <  2:1847/139‑1 (MQ=255)

                  cTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCata                                                                                                                  >  1:1247498/1‑140 (MQ=255)

                     aaGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCt                                                                                                               >  2:1121643/1‑140 (MQ=255)

                      aGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTg                                                                                                              <  1:1349503/140‑1 (MQ=255)

                        gTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTa                                                                                                            <  1:1390305/140‑1 (MQ=255)

                        gTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTa                                                                                                            <  1:2377723/140‑1 (MQ=255)

                        gTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTa                                                                                                            <  2:605886/140‑1 (MQ=255)

                          tCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTaca                                                                                                          <  2:1621300/140‑1 (MQ=255)

                          tCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCGGTaca                                                                                                          <  2:2527500/140‑1 (MQ=255)

                                 aaGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATtc                                                                                                   <  1:766513/140‑1 (MQ=255)

                                 aaGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATtc                                                                                                   <  1:878535/140‑1 (MQ=255)

                                      aTAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGtt                                                                                              <  1:452644/140‑1 (MQ=255)

                                      aTAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGtt                                                                                              <  1:1686782/140‑1 (MQ=255)

                                      aTAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGtt                                                                                              <  2:807950/140‑1 (MQ=255)

                                      aTAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGtt                                                                                              <  1:981260/140‑1 (MQ=255)

                                       tAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGttt                                                                                             >  2:1408434/1‑139 (MQ=255)

                                            ttttCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTc                                                                                        >  1:2519335/1‑140 (MQ=255)

                                              ttCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCaa                                                                                      <  1:385116/140‑1 (MQ=255)

                                              ttCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCaa                                                                                      >  1:413052/1‑140 (MQ=255)

                                              ttCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCaa                                                                                      >  2:2081946/1‑140 (MQ=255)

                                               tCGTCAGCTTTGGCCGGATAAGGGACACGTTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAAt                                                                                     <  2:2378242/140‑1 (MQ=255)

                                               tCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAAt                                                                                     <  2:318129/140‑1 (MQ=255)

                                               tCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAAt                                                                                     <  1:1079484/140‑1 (MQ=255)

                                               tCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAAt                                                                                     <  2:2104237/140‑1 (MQ=255)

                                               tCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAAt                                                                                     <  1:735610/140‑1 (MQ=255)

                                                cGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATg                                                                                    <  1:1000688/140‑1 (MQ=255)

                                                 gTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGc                                                                                   <  1:1559647/140‑1 (MQ=255)

                                                 gTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGc                                                                                   <  1:209047/140‑1 (MQ=255)

                                                 gTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGc                                                                                   <  2:1424827/140‑1 (MQ=255)

                                                 gTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGc                                                                                   <  2:493585/140‑1 (MQ=255)

                                                     gCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTa                                                                               <  2:1080656/140‑1 (MQ=255)

                                                      cTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTAt                                                                              >  2:2162352/1‑140 (MQ=255)

                                                            ccGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAg                                                                        <  1:1647651/140‑1 (MQ=255)

                                                                aTAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGAc                                                                    >  2:1547508/1‑140 (MQ=255)

                                                                   aGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGc                                                                 <  2:2094643/140‑1 (MQ=255)

                                                                   aGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGc                                                                 <  2:1859411/140‑1 (MQ=255)

                                                                   aGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGc                                                                 <  1:1025848/140‑1 (MQ=255)

                                                                          cgttGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGttt                                                          >  1:1387358/3‑140 (MQ=255)

                                                                             tGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGa                                                       >  2:2101760/1‑140 (MQ=255)

                                                                               cGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACg                                                     >  1:485900/1‑140 (MQ=255)

                                                                                   gTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGAtt                                                 <  1:2256559/140‑1 (MQ=255)

                                                                                   gTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGAtt                                                 <  1:1979568/140‑1 (MQ=255)

                                                                                       cGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATg                                             >  1:1316809/1‑140 (MQ=255)

                                                                                         aCCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGc                                           <  1:2162352/140‑1 (MQ=255)

                                                                                                 ataACGGGTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGttt                                   <  1:2434583/140‑1 (MQ=255)

                                                                                                      gggTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCt                              <  1:682717/140‑1 (MQ=255)

                                                                                                      gggTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCt                              <  1:1427243/140‑1 (MQ=255)

                                                                                                      gggTAAAAACACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCt                              <  1:1828762/140‑1 (MQ=255)

                                                                                                       ggTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCtt                             >  2:1590378/1‑140 (MQ=255)

                                                                                                       ggTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCtt                             >  2:2256407/1‑140 (MQ=255)

                                                                                                        gTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTc                            >  1:2061576/1‑140 (MQ=255)

                                                                                                        gTAAAACCACCATCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTc                            >  2:2279859/1‑140 (MQ=255)

                                                                                                              ccaccaTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTaa                      <  2:2453985/140‑1 (MQ=255)

                                                                                                              ccaccaTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTaa                      <  1:2256407/140‑1 (MQ=255)

                                                                                                                 ccaTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTc                   >  1:926803/1‑140 (MQ=255)

                                                                                                                  caTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCt                  >  2:2261969/1‑140 (MQ=255)

                                                                                                                  caTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCt                  >  2:1926625/1‑140 (MQ=255)

                                                                                                                   aTCAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCtg                 >  2:1727900/1‑140 (MQ=255)

                                                                                                                     cAACATGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCtgat               <  1:312481/140‑1 (MQ=255)

                                                                                                                          tGAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTc          <  1:1687605/140‑1 (MQ=255)

                                                                                                                           gAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCg         <  2:2519335/140‑1 (MQ=255)

                                                                                                                           gAGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCg         <  1:1926625/140‑1 (MQ=255)

                                                                                                                            aGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGc        <  2:1987342/140‑1 (MQ=255)

                                                                                                                            aGGGAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGc        >  1:1987342/1‑140 (MQ=255)

                                                                                                                             gggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCt       >  1:898350/1‑140 (MQ=255)

                                                                                                                             gggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCt       <  1:623050/140‑1 (MQ=255)

                                                                                                                             gggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAATGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCt       <  2:2233090/140‑1 (MQ=255)

                                                                                                                              ggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCg         >  2:944149/1‑137 (MQ=255)

                                                                                                                              ggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCtt      >  2:1013281/1‑139 (MQ=255)

                                                                                                                              ggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCtt      >  2:2087180/1‑139 (MQ=255)

                                                                                                                              ggAAATAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCTa      >  1:1068233/1‑140 (MQ=255)

                                                                                                                                  aTAAATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCTATGaa  <  2:1298933/140‑1 (MQ=255)

CGGCATGAATCGCGACGGCTAAAGGTTCGGCAAAAGCCATAACCTTTTCGTCAGCTTTGGCCGGATAAGGGACACATTGCGACGTTTCGACCATTTTATAACGGGTAAAACCACCATCAACATGAGGGAAATACATGGCACTGCCAAAAAAACGCATATCTGTACACTGATTCTCGTTATGTTCAATGCAGTATTTGCAGTGACCGCACGGTTTAGACGGATTAATGGCTACCGTTTGCCCTTCATGTAATTCTGATGAGTCGCTATGAA  >  NC_000913/4493923‑4494192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A