Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,220,905	G→A	P528L (CCA→CTA)	arpA ←	regulator of acetyl CoA synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,220,905	0	G	A	100.0%	515.5 / NA	143	P528L (CCA→CTA)	arpA	regulator of acetyl CoA synthetase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (62/81); total (62/81)

Only 100 of 145 total aligned reads displayed.

GCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACATGGTA  >  NC_000913/4220768‑4221041

 cgcAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGc                                                                                                                                       <  2:1130529/140‑1 (MQ=255)

 cgcAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGc                                                                                                                                       >  2:1418335/1‑140 (MQ=255)

    aaGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAAc                                                                                                                                    <  1:429068/140‑1 (MQ=255)

         ttttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATaa                                                                                                                               <  1:1173323/140‑1 (MQ=255)

           ttAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATaaaa                                                                                                                             <  2:1960093/140‑1 (MQ=255)

                ggTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCGTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCt                                                                                                                        <  1:1220007/140‑1 (MQ=255)

                 gTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCtt                                                                                                                       >  1:1631608/1‑140 (MQ=255)

                        gaTCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTc                                                                                                                <  2:1569642/140‑1 (MQ=255)

                        gaTCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTc                                                                                                                <  2:1879688/140‑1 (MQ=255)

                        gaTCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTc                                                                                                                <  1:1283270/140‑1 (MQ=255)

                           cTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAgg                                                                                                             <  1:694278/140‑1 (MQ=255)

                           cTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAgg                                                                                                             <  1:1864597/140‑1 (MQ=255)

                            tACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGga                                                                                                            <  1:7508/140‑1 (MQ=255)

                              cAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGgaga                                                                                                          >  1:2117339/1‑140 (MQ=255)

                              cAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGgaga                                                                                                          <  1:1808235/140‑1 (MQ=255)

                                atatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGga                                                                                                            <  1:1667612/136‑1 (MQ=255)

                                atatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc                                                                                                        >  2:1234709/1‑140 (MQ=255)

                                atatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc                                                                                                        >  2:766489/1‑140 (MQ=255)

                                atatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATc                                                                                                        >  2:886801/1‑140 (MQ=255)

                                 tatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGTAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCg                                                                                                       <  1:1719654/140‑1 (MQ=255)

                                 tatCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCg                                                                                                       <  2:1303571/140‑1 (MQ=255)

                                   tCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGTTATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAg                                                                                                     >  1:1383400/1‑140 (MQ=255)

                                   tCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAg                                                                                                     <  2:1326982/140‑1 (MQ=255)

                                   tCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAg                                                                                                     >  2:1666902/1‑140 (MQ=255)

                                    cGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGt                                                                                                    <  1:393700/140‑1 (MQ=255)

                                    cGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGt                                                                                                    >  2:1390063/1‑140 (MQ=255)

                                    cGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGt                                                                                                    >  2:754580/1‑140 (MQ=255)

                                      gAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTAc                                                                                                  <  2:362182/140‑1 (MQ=255)

                                      gAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTAc                                                                                                  >  1:45637/1‑140 (MQ=255)

                                       aaGATGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTAcc                                                                                                 <  1:1853007/140‑1 (MQ=255)

                                        aGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCt                                                                                                >  2:420520/1‑140 (MQ=255)

                                           tGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGtt                                                                                             >  1:1875140/1‑140 (MQ=255)

                                            gAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTc                                                                                            <  2:645215/140‑1 (MQ=255)

                                              aaTGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCtt                                                                                          <  1:1963204/140‑1 (MQ=255)

                                                tGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTa                                                                                        <  1:14715/140‑1 (MQ=255)

                                                  ttAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGt                                                                                      <  1:525806/140‑1 (MQ=255)

                                                  ttAATGTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTACTTTAGt                                                                                      <  2:108333/140‑1 (MQ=255)

                                                     aTTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCaa                                                                                   <  2:437088/140‑1 (MQ=255)

                                                             ggCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACAtg                                                                           <  2:1388712/140‑1 (MQ=255)

                                                               cTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACAtgtg                                                                         <  1:452170/140‑1 (MQ=255)

                                                               cTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACAtgtg                                                                         >  2:733528/1‑140 (MQ=255)

                                                                 aGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCg                                                                       >  1:1482286/1‑140 (MQ=255)

                                                                  ggCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGa                                                                      >  1:72442/1‑140 (MQ=255)

                                                                  ggCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGa                                                                      >  2:1735658/1‑140 (MQ=255)

                                                                   gCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  2:1482286/140‑1 (MQ=255)

                                                                   gCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  2:1542824/140‑1 (MQ=255)

                                                                   gCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  1:1234709/140‑1 (MQ=255)

                                                                   gCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  1:140135/140‑1 (MQ=255)

                                                                   gCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  1:1174741/140‑1 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACTTGTGCGAATTaa                                                                 >  1:1374855/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGaa                                                                     <  1:399308/136‑1 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  2:1332427/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  1:1576419/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  2:1518686/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  1:965106/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  1:885010/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 <  2:72442/140‑1 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 <  1:733528/140‑1 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  1:1960449/1‑140 (MQ=255)

                                                                       ggCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTaa                                                                 >  1:281307/1‑140 (MQ=255)

                                                                        gCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAAc                                                                <  2:2117339/140‑1 (MQ=255)

                                                                        gCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAAc                                                                >  2:1739387/1‑140 (MQ=255)

                                                                        gCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAAc                                                                <  1:645299/140‑1 (MQ=255)

                                                                         cAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTATGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACa                                                               <  1:142844/140‑1 (MQ=255)

                                                                            tGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAg                                                            >  2:1607146/1‑140 (MQ=255)

                                                                              cTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGt                                                          >  1:1358736/1‑140 (MQ=255)

                                                                                      aTAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGtt                                                  >  1:2116163/1‑140 (MQ=255)

                                                                                         aCTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATTTGCGAATTAACAAAGGTAACGCGTTCaa                                               >  2:2006760/1‑140 (MQ=255)

                                                                                           tttCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCaaaa                                             <  1:148686/140‑1 (MQ=255)

                                                                                                    atCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCa                                    >  1:1955132/1‑140 (MQ=255)

                                                                                                          aTGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGt                              <  2:627518/140‑1 (MQ=255)

                                                                                                           tGTCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTc                             >  1:1702451/1‑140 (MQ=255)

                                                                                                             tCCATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCgg                           >  1:2059093/1‑140 (MQ=255)

                                                                                                               cATTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAAC‑AAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCAt                        >  1:244864/1‑140 (MQ=255)

                                                                                                                aTTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCAt                        <  1:617987/140‑1 (MQ=255)

                                                                                                                aTTTTGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCAt                        <  2:1710106/140‑1 (MQ=255)

                                                                                                                 ttttGCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATc                       >  2:2081158/1‑140 (MQ=255)

                                                                                                                     gCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCa                   <  1:1087734/140‑1 (MQ=255)

                                                                                                                     gCATCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCa                   <  1:2006760/140‑1 (MQ=255)

                                                                                                                       aTCGCTAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCACATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 <  2:1286277/140‑1 (MQ=255)

                                                                                                                       aTCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 <  2:1702451/140‑1 (MQ=255)

                                                                                                                       aTCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 <  2:1967959/140‑1 (MQ=255)

                                                                                                                       aTCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 <  1:974366/140‑1 (MQ=255)

                                                                                                                       aTCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 >  1:519824/1‑140 (MQ=255)

                                                                                                                        tCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTc                >  1:1532396/1‑140 (MQ=255)

                                                                                                                        tCGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTc                <  2:45637/140‑1 (MQ=255)

                                                                                                                         cGCCAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCg               <  2:885010/140‑1 (MQ=255)

                                                                                                                            cAGATATAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCa            <  2:1897216/140‑1 (MQ=255)

                                                                                                                               atatAGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATaa         <  1:1739387/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  1:1429976/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  2:603407/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  1:886801/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  2:360759/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  1:1505084/140‑1 (MQ=255)

                                                                                                                                 ataGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACa       <  2:1267271/140‑1 (MQ=255)

                                                                                                                                  taGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACAt      <  1:1518686/140‑1 (MQ=255)

                                                                                                                                  taGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACAt      <  2:1181079/140‑1 (MQ=255)

                                                                                                                                   aGTCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACATg     <  1:1546725/140‑1 (MQ=255)

                                                                                                                                     tCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 <  1:614070/126‑1 (MQ=255)

                                                                                                                                     tCCTAGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCAtt                 >  2:614070/1‑126 (MQ=255)

GCGCAAGACTTTTAGCGGTCAGAAGATCTACAATATCGGAAGCTGAAATGTTAATTTCCTGGGCTAGGCTGGGCAATGCTTCAAGAATAACTTTCACGATATCGCTATGTCCATTTTGCATCGCCAGATATAGTCCTGGGCAACCATAAAAATCCTTTGCCTTCAGGAGATCGAGTACCTGTTCTTTAGTCAAATGACATGTGCGAATTAACAAAGGTAACGCGTTCAAAACAATTTTCAGCATGTCGGCATCACCATTCGCCATAACATGGTA  >  NC_000913/4220768‑4221041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A