Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F48 I1 R1 56 123.4 4244010 99.1% 4205813 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,463,596 G→A H372Y (CAT→TAT)  treC ← trehalose‑6‑phosphate hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,463,5960GA100.0% 440.3 / NA 125H372Y (CAT→TAT) treCtrehalose‑6‑phosphate hydrolase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (62/63);  total (62/63)

Only 100 of 129 total aligned reads displayed.

CATGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATGCGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAATGCGCG  >  NC_000913/4463459‑4463730
                                                                                                                                         |                                                                                                                                      
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGTTAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  1:1322479/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  1:1369708/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  2:1904645/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  1:586702/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  1:1282487/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    >  1:67982/1‑140 (MQ=255)
  tGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACggg                                                                                                                                    <  1:936230/140‑1 (MQ=255)
   gggCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGt                                                                                                                                   <  1:1716519/140‑1 (MQ=255)
     gCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTg                                                                                                                                 >  2:1050917/1‑140 (MQ=255)
     gCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTg                                                                                                                                 >  2:1531157/1‑140 (MQ=255)
      cGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTgg                                                                                                                                <  2:215465/140‑1 (MQ=255)
       gTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGt                                                                                                                               <  1:1323609/140‑1 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTgg                                                                                                                                >  2:17300/1‑138 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTgg                                                                                                                                <  1:17300/138‑1 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTc                                                                                                                              >  2:1462118/1‑140 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTc                                                                                                                              >  2:503158/1‑140 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTc                                                                                                                              >  2:1810044/1‑140 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTc                                                                                                                              >  2:202415/1‑140 (MQ=255)
        tGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTc                                                                                                                              >  1:1853708/1‑140 (MQ=255)
             cTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGcc                                                                                                                         <  2:556223/140‑1 (MQ=255)
              tgttgtCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCa                                                                                                                        <  2:1671403/140‑1 (MQ=255)
              tgttgtCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCa                                                                                                                        <  1:1024629/140‑1 (MQ=255)
               gttgtCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCaa                                                                                                                       <  2:101830/140‑1 (MQ=255)
                  gtCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAAtct                                                                                                                    >  1:1928770/1‑140 (MQ=255)
                     aCGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCtt                                                                                                                 <  1:503158/140‑1 (MQ=255)
                       gggATTTACTGGCGAGGATTGCAAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCg                                                                                                               <  2:1532746/140‑1 (MQ=255)
                        ggATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGc                                                                                                              <  1:1705672/140‑1 (MQ=255)
                        ggATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGc                                                                                                              <  1:181034/140‑1 (MQ=255)
                        ggATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGc                                                                                                              <  2:1024030/140‑1 (MQ=255)
                        ggATTTACTGGCGAGGATTGCCAATAACTCGTCGGAATCACGCCCATCGTTGCGCGGCTCGGCAAACATATTGTGGCTCTCTTCGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGc                                                                                                              <  2:1891155/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  2:1369708/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  1:1926643/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  1:1312151/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  1:1246022/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  2:1910151/140‑1 (MQ=255)
                         gATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGcc                                                                                                             <  2:1986222/140‑1 (MQ=255)
                          aTTTACTGGCGAGGATCGCCAATAGCTCGTCGGCATCACGCTCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTATACGTCGCGATAATAAGTAATGCGCGTGAATTACGGGTTGGTCATGCCAATCTCTTCGccc                                                                                                            <  2:1682462/140‑1 (MQ=255)
                           tttACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCt                                                                                                           <  2:1184683/140‑1 (MQ=255)
                            ttACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTg                                                                                                          >  1:572794/1‑140 (MQ=255)
                             tACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTgt                                                                                                         >  2:772322/1‑139 (MQ=255)
                             tACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTgg                                                                                                         <  2:1886441/140‑1 (MQ=255)
                               cTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTa                                                                                                       <  2:804122/140‑1 (MQ=255)
                                  gCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGat                                                                                                    <  2:1081403/140‑1 (MQ=255)
                                      ggATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATAc                                                                                                <  1:772322/140‑1 (MQ=255)
                                       gATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACg                                                                                               <  1:1135188/140‑1 (MQ=255)
                                       gATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACg                                                                                               >  1:1822428/1‑140 (MQ=255)
                                       gATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACg                                                                                               <  1:1810044/140‑1 (MQ=255)
                                       gATTGCCAAT‑ACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGGCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACgg                                                                                              >  2:1069907/1‑140 (MQ=255)
                                          tGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCg                                                                                            <  2:1322479/140‑1 (MQ=255)
                                           gCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGt                                                                                           <  1:1510403/140‑1 (MQ=255)
                                            ccAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGtt                                                                                          >  2:446142/1‑140 (MQ=255)
                                            ccAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGtt                                                                                          <  2:572794/140‑1 (MQ=255)
                                                aaaCTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCt                                                                                      <  2:806644/139‑1 (MQ=255)
                                                aaaCTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCt                                                                                      <  2:184050/139‑1 (MQ=255)
                                                  aCTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGc                                                                                    >  2:78661/1‑140 (MQ=255)
                                                     cgtcgGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGcatg                                                                                 <  1:1050917/140‑1 (MQ=255)
                                                      gtcgGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGcatgc                                                                                >  2:102173/1‑140 (MQ=255)
                                                       tcgGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGcatgcc                                                                               >  1:1560254/1‑140 (MQ=255)
                                                            aTCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATgca                                                                          <  2:1853708/140‑1 (MQ=255)
                                                                      tCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGc                                                                >  1:1896111/1‑140 (MQ=255)
                                                                               aGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCAtttt                                                       >  1:1163289/1‑140 (MQ=255)
                                                                               aGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCAtttt                                                       >  2:583194/1‑140 (MQ=255)
                                                                                 cTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTg                                                     >  1:1122686/1‑140 (MQ=255)
                                                                                         aCATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGc                                             <  1:804554/140‑1 (MQ=255)
                                                                                            tatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  1:320469/140‑1 (MQ=255)
                                                                                            tatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  1:1462118/140‑1 (MQ=255)
                                                                                            tatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  1:377277/140‑1 (MQ=255)
                                                                                            aatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  2:1631426/139‑1 (MQ=255)
                                                                                            aatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  2:1928770/139‑1 (MQ=255)
                                                                                            aatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  2:1157225/139‑1 (MQ=255)
                                                                                            aatTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  2:553529/139‑1 (MQ=255)
                                                                                             atTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcgc                                         <  1:509876/140‑1 (MQ=255)
                                                                                              ttGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcgcg                                        <  1:78661/140‑1 (MQ=255)
                                                                                                   gCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTAtt                                   >  2:217842/1‑140 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATATGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCa                                 >  2:89237/1‑140 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          <  2:1395010/131‑1 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCAcg                                          >  1:1395010/1‑131 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCa                                 >  1:1046823/1‑140 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCa                                 <  1:1585972/140‑1 (MQ=255)
                                                                                                     tctctACGTCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCa                                 >  1:1543185/1‑140 (MQ=255)
                                                                                                             tCGCGATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTtcatc                         >  1:1068216/1‑140 (MQ=255)
                                                                                                              cgcgATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTtcatca                        >  1:262276/1‑140 (MQ=255)
                                                                                                                 gATAGTCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCa                     >  1:1938157/1‑140 (MQ=255)
                                                                                                                      tCAGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCg                <  2:1375866/140‑1 (MQ=255)
                                                                                                                        aGTAATGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCgag              >  1:1207463/1‑140 (MQ=255)
                                                                                                                             tGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACa         >  2:937982/1‑140 (MQ=255)
                                                                                                                             tGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACa         >  1:1873909/1‑140 (MQ=255)
                                                                                                                             tGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACa         >  1:117589/1‑140 (MQ=255)
                                                                                                                             tGCGCGTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTT‑CCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACaa        >  1:520962/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  2:1811771/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  2:414173/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:705998/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:2038616/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:1800401/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:1574422/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:1075107/1‑140 (MQ=255)
                                                                                                                               cgcgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAAt       >  1:1072325/1‑140 (MQ=255)
                                                                                                                                gcgTGAAAAACGGGATGGTTATGCCAATCTCTTCGCCCTGGTAGATATACGGCTTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAATg      <  2:117589/140‑1 (MQ=255)
                                                                                                                                 cgTGAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAATgc     >  1:1037525/1‑140 (MQ=255)
                                                                                                                                    gAAATACGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAATGcgcg  >  2:1695490/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
CATGGGCGTGCGACTGTTGTCACGGGATTTACTGGCGAGGATTGCCAATAACTCGTCGGCATCACGCCCATCGTTGCGCAGCTCGGCAAACATATTGAGGCTCTCTACGTCGCGATAGTCAGTAATGCGCGTGAAATGCGGGTTGGTCATGCCAATCTCTTCGCCCTGGTAGATATACGGCGTTCCCTGCATGCCATGCAGCACCATCGCCAGCATTTTTGCCGCAGGCACGCGGTATTCACCTTCATCACCAAAGCGAGAAACAATGCGCG  >  NC_000913/4463459‑4463730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A