Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,488,353	G→A	A346T (GCC→ACC)	lptG →	lipopolysaccharide transport system protein LptG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,488,353	0	G	A	100.0%	427.8 / NA	123	A346T (GCC→ACC)	lptG	lipopolysaccharide transport system protein LptG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (57/66); total (57/66)

Only 100 of 125 total aligned reads displayed.

CGTAGCGTACCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCA  >  NC_000913/4488218‑4488489

cgtagcgtaCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAg                                                                                                                                      >  1:226852/1‑140 (MQ=255)

  tagcgtaCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTTTTCTACGTCCTGGCCCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGct                                                                                                                                    <  2:738982/140‑1 (MQ=255)

  tagcgtaCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGct                                                                                                                                    >  2:429048/1‑140 (MQ=255)

  tagcgtaCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTCGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGct                                                                                                                                    <  2:1687209/140‑1 (MQ=255)

  tagcgtaCCGATGGGCGTGCGTCTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGct                                                                                                                                    <  1:1772329/140‑1 (MQ=255)

        aCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGcttcttct                                                                                                                              >  1:1051608/1‑140 (MQ=255)

        aCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGcttcttct                                                                                                                              >  2:1796131/1‑140 (MQ=255)

        aCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGcttcttct                                                                                                                              >  2:626105/1‑140 (MQ=255)

        aCCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTT‑GTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGcttcttctt                                                                                                                             >  1:507312/1‑140 (MQ=255)

          cGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGct                                                                                                                                    <  1:827816/132‑1 (MQ=255)

          cGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTa                                                                                                                            >  2:1589245/1‑140 (MQ=255)

          cGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTa                                                                                                                            >  2:1503278/1‑140 (MQ=255)

          cGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTa                                                                                                                            >  1:1908894/1‑140 (MQ=255)

            aTGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAAt                                                                                                                          <  1:1077434/140‑1 (MQ=255)

            aTGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAAt                                                                                                                          <  2:1974913/140‑1 (MQ=255)

            aTGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAAt                                                                                                                          <  1:1916381/140‑1 (MQ=255)

                 cgtgcgtgTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGcc                                                                                                                     >  2:1824264/1‑140 (MQ=255)

                    gcgtgTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCtgt                                                                                                                  <  2:80957/140‑1 (MQ=255)

                    gcgtgTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCtgt                                                                                                                  >  2:159707/1‑140 (MQ=255)

                    gcgtgTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCtgt                                                                                                                  <  1:2013994/140‑1 (MQ=255)

                       tgtgGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGc                                                                                                               >  2:62732/1‑140 (MQ=255)

                          ggTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGt                                                                                                            >  1:1736865/1‑140 (MQ=255)

                           gTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGtt                                                                                                           <  1:297831/140‑1 (MQ=255)

                           gTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGtt                                                                                                           >  1:425461/1‑140 (MQ=255)

                           atCACCGTTATCAGTTTCGGTTTTGTCTTCAACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGtt                                                                                                           <  2:1858024/139‑1 (MQ=255)

                              aCCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAAt                                                                                                        >  1:712894/1‑140 (MQ=255)

                              aCCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAAt                                                                                                        >  1:1125144/1‑140 (MQ=255)

                                 ggTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATgag                                                                                                     <  2:575/140‑1 (MQ=255)

                                 ggTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTT‑GTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATgaga                                                                                                    <  2:507312/140‑1 (MQ=255)

                                         tttCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGt                                                                                             >  2:1752040/1‑140 (MQ=255)

                                           tCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTaa                                                                                           <  2:305548/140‑1 (MQ=255)

                                           acGGTTTTGTCTTCTACGTAAGGGACCAAATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTaa                                                                                           >  2:1999421/2‑140 (MQ=255)

                                             ggTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAAcc                                                                                         >  1:269099/1‑140 (MQ=255)

                                                   gTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGa                                                                                   >  2:48424/1‑140 (MQ=255)

                                                    tcttctCCGTACTGGGCCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCCTCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGaa                                                                                  <  1:107665/140‑1 (MQ=255)

                                                    tcttctACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGaa                                                                                  <  2:1520740/140‑1 (MQ=255)

                                                    tcttctACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGaa                                                                                  <  2:226852/140‑1 (MQ=255)

                                                    tcttctACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGaa                                                                                  <  1:19631/140‑1 (MQ=255)

                                                              aCTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAgg                                                                        >  1:427465/1‑140 (MQ=255)

                                                                  gACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGc                                                                    >  2:1946606/1‑140 (MQ=255)

                                                                  gACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGc                                                                    >  1:1184967/1‑140 (MQ=255)

                                                                  gACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGc                                                                    >  1:1683329/1‑140 (MQ=255)

                                                                  gACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGACCATCGGCCCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCTTGTGCCTTTTAATGAGAAAATCGAAACCGATTGAACGAATAAAggtggc                                                                    >  2:541617/1‑136 (MQ=255)

                                                                   aCCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATGATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCg                                                                   >  1:1416286/1‑140 (MQ=255)

                                                                   aCCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCg                                                                   <  1:62732/140‑1 (MQ=255)

                                                                    ccAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGa                                                                  <  2:427465/140‑1 (MQ=255)

                                                                    ccAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGa                                                                  <  1:602106/140‑1 (MQ=255)

                                                                    ccAGATCTTCGGCCCGCTGACGTTGGTTTATGGAATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGa                                                                  <  2:1051608/140‑1 (MQ=255)

                                                                     cAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGaa                                                                 >  1:365290/1‑140 (MQ=255)

                                                                       gATCTTGGGCCCGCTGATGTTGTTTTATTCCTCCCCGCCGATGATCGGCGCACTGTTGACAAGCACCACCTTATATGTAATCACAATGTGGCTATTAACGAGTAAATCTTATCCGAATGAACGAATAAAGGGAGCGAAAg                                                               <  2:1416286/140‑1 (MQ=255)

                                                                       gATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAg                                                               >  1:902941/1‑140 (MQ=255)

                                                                       gATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAg                                                               <  2:816204/140‑1 (MQ=255)

                                                                        aTCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGc                                                              <  2:712894/140‑1 (MQ=255)

                                                                         tCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCt                                                             <  1:1503278/140‑1 (MQ=255)

                                                                         tCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCt                                                             <  1:1589245/140‑1 (MQ=255)

                                                                         tCTTCGGCCCGCTGACGTGGGTTTAGGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCt                                                             <  2:1258630/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGGCGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  2:2056679/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGAGCTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTGAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  2:451163/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGGGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  1:1970804/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  2:1125144/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  1:1999421/140‑1 (MQ=255)

                                                                           ttCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  1:895085/140‑1 (MQ=255)

                                                                           ttCGGCCCACTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTcc                                                           <  1:771453/140‑1 (MQ=255)

                                                                             cGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCt                                                         >  2:2062570/1‑140 (MQ=255)

                                                                                cccGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTtta                                                      <  2:595132/140‑1 (MQ=255)

                                                                                  cGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAg                                                                     >  2:896729/1‑123 (MQ=255)

                                                                                  cGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAg                                                                     <  1:896729/123‑1 (MQ=255)

                                                                                  cGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTttatt                                                    <  2:1362493/140‑1 (MQ=255)

                                                                                    cTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTtattat                                                  >  2:897337/1‑140 (MQ=255)

                                                                                            ggTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCa                                          <  2:232604/140‑1 (MQ=255)

                                                                                             gTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCaa                                         <  1:1527708/140‑1 (MQ=255)

                                                                                              tttATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCa                                          <  1:258841/138‑1 (MQ=255)

                                                                                                  tGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAgtgt                                    <  1:1291100/140‑1 (MQ=255)

                                                                                                    gCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGc                                  <  1:1350539/140‑1 (MQ=255)

                                                                                                     cATCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCt                                 <  1:488538/140‑1 (MQ=255)

                                                                                                       tCCCGCCGATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTc                               >  1:1198615/1‑140 (MQ=255)

                                                                                                          cgccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGtt                            <  1:2045120/140‑1 (MQ=255)

                                                                                                          cgccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGtt                            <  2:1683329/140‑1 (MQ=255)

                                                                                                          cgccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGtt                            <  2:392385/140‑1 (MQ=255)

                                                                                                            ccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCaaa                                        <  1:763516/126‑1 (MQ=255)

                                                                                                            ccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCaaa                                        >  2:763516/1‑126 (MQ=255)

                                                                                                            ccgATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCa                          >  1:1029252/1‑140 (MQ=255)

                                                                                                              gATCATCGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCAtt                        >  2:901879/1‑140 (MQ=255)

                                                                                                               atcatcGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTc                       >  1:352737/1‑140 (MQ=255)

                                                                                                                 catcGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCt                     >  1:873337/1‑140 (MQ=255)

                                                                                                                    cGGCGCACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGaa                  >  1:1727470/1‑140 (MQ=255)

                                                                                                                       cgcACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGaaaaa               >  2:894525/1‑140 (MQ=255)

                                                                                                                       cgcACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGaaaaa               >  2:1274719/1‑140 (MQ=255)

                                                                                                                         cACTGTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAaata             >  2:644132/1‑140 (MQ=255)

                                                                                                                             gTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTa         <  1:1752040/140‑1 (MQ=255)

                                                                                                                             gTTGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTa         <  2:352737/140‑1 (MQ=255)

                                                                                                                             attGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTa         <  2:12843/139‑1 (MQ=255)

                                                                                                                              ttGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTaa        >  2:341979/1‑140 (MQ=255)

                                                                                                                              ttGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTa         <  1:1288368/139‑1 (MQ=255)

                                                                                                                              ttGCCAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTa         >  2:1288368/1‑139 (MQ=255)

                                                                                                                                  cAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAAtt    <  1:48424/140‑1 (MQ=255)

                                                                                                                                  cAAGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAAtt    <  1:1249177/140‑1 (MQ=255)

                                                                                                                                   aaGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTc   >  1:1153470/1‑140 (MQ=255)

                                                                                                                                    aGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCa  <  2:1817058/140‑1 (MQ=255)

                                                                                                                                    aGCACCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCa  <  2:1153470/140‑1 (MQ=255)

CGTAGCGTACCGATGGGCGTGCGTGTGGTCACCGGTATCAGTTTCGGTTTTGTCTTCTACGTACTGGACCAGATCTTCGGCCCGCTGACGTTGGTTTATGGCATCCCGCCGATCATCGGCGCACTGTTGCCAAGCGCCAGCTTCTTCTTAATCAGCCTGTGGCTGTTAATGAGAAAATCGTAACCGAATGAACGAATAAAGGGAGCGAAAGCTCCCTTTATTATTGTTAGCAAAGTGTGCTTCGTTCATTCCTGAAAAATAATTAAAATTCA  >  NC_000913/4488218‑4488489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A