Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F48 I1 R1 62 93.4 3176452 99.2% 3151040 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,491,339 G→T P396H (CCT→CAT)  idnT ← L‑idonate/5‑ketogluconate/gluconate transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,491,3390GT100.0% 281.9 / NA 79P396H (CCT→CAT) idnTL‑idonate/5‑ketogluconate/gluconate transporter
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (47/32);  total (47/32)

TTTCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCAGGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACGGTGGCAGAGCCCA  >  NC_000913/4491204‑4491474
                                                                                                                                       |                                                                                                                                       
tttCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTc                                                                                                                                     >  1:733509/1‑140 (MQ=255)
tttCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTc                                                                                                                                     >  1:815382/1‑140 (MQ=255)
tttCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTc                                                                                                                                     >  1:202446/1‑140 (MQ=255)
tttCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTc                                                                                                                                     >  2:819450/1‑140 (MQ=255)
  tCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCAtgg                                                                                                                                       >  2:799726/1‑136 (MQ=255)
  tCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGt                                                                                                                                   >  2:7640/1‑140 (MQ=255)
          aTACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACgtgt                                                                                                                           >  1:169216/1‑140 (MQ=255)
           tACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGtgtg                                                                                                                          >  1:198197/1‑140 (MQ=255)
             cGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGAc                                                                                                                        <  1:658232/140‑1 (MQ=255)
                cGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGAcgcg                                                                                                                     >  1:1581940/1‑140 (MQ=255)
                cGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGAcgcg                                                                                                                     >  1:835981/1‑140 (MQ=255)
                cGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGAcgcg                                                                                                                     >  1:1066570/1‑140 (MQ=255)
                  ttAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGAt                                                                                                                   >  2:161053/1‑140 (MQ=255)
                  ttAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGAt                                                                                                                   >  2:1213392/1‑140 (MQ=255)
                     aTGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCAc                                                                                                                <  2:932499/140‑1 (MQ=255)
                             cacGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCg                                                                                                        <  1:1046932/140‑1 (MQ=255)
                               cGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCa                                                                                                      <  1:1213392/140‑1 (MQ=255)
                                 cccAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCAcc                                                                                                    >  2:1250007/1‑140 (MQ=255)
                                 cccAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCAcc                                                                                                    >  2:1327605/1‑140 (MQ=255)
                                  ccAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCg                                                                                                   >  1:952300/1‑140 (MQ=255)
                                   cAGCAAACCCATAATAGAAATAAGGGTTTCCATCTCCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCgg                                                                                                  <  1:1389372/140‑1 (MQ=255)
                                     gCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGtt                                                                                                <  2:1055106/140‑1 (MQ=255)
                                     ccAAACCCATAATAGAAATAAGGGTTTCCATAACCGTCCAGGTACGCAAAGTATCCACAAACGACAGATTAAAATACCCTTTAAATAGCCAGAAGCAATGGCCGTTAACGTGTGACGCGATCACGCTGCCCGCACCGGtt                                                                                                >  2:1055079/2‑140 (MQ=255)
                                      cAAACCCATAATAGAAATAAGGGTTTCGATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCGCGCTGCCCGCACCGGTTg                                                                                               >  1:1290249/1‑140 (MQ=255)
                                       aaaCCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGc                                                                                              <  2:815382/140‑1 (MQ=255)
                                          cccATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAg                                                                                           <  1:812046/140‑1 (MQ=255)
                                          cccATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAg                                                                                           <  1:7640/140‑1 (MQ=255)
                                          accATAATAGAAATAAGGGTTGCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTCCGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAg                                                                                           <  2:1444182/139‑1 (MQ=255)
                                           ccATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGt                                                                                          <  2:1066570/140‑1 (MQ=255)
                                           ccATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGt                                                                                          >  1:424753/1‑140 (MQ=255)
                                           ccATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGt                                                                                          <  1:1180543/140‑1 (MQ=255)
                                                    aaaTAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTaaa                                                                                 >  2:258266/1‑140 (MQ=255)
                                                      aTAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGc                                                                               >  1:369834/1‑140 (MQ=255)
                                                         aGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCggg                                                                            <  2:1168273/140‑1 (MQ=255)
                                                          gggTTTCCATCACCGTCCAGGTCCGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGa                                                                           <  1:1327605/140‑1 (MQ=255)
                                                          gggTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGa                                                                           <  2:1581940/140‑1 (MQ=255)
                                                          gggTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGa                                                                           <  2:202446/140‑1 (MQ=255)
                                                           ggTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGAt                                                                          >  2:955085/1‑140 (MQ=255)
                                                           ggTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGAt                                                                          >  1:1346216/1‑140 (MQ=255)
                                                              ttCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGa                                                                           <  1:1247870/136‑1 (MQ=255)
                                                              ttCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGa                                                                           >  2:1247870/1‑136 (MQ=255)
                                                              ttCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCgg                                                                       >  2:291172/1‑140 (MQ=255)
                                                                  aTCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATg                                                                   >  1:637956/1‑140 (MQ=255)
                                                                    cACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCGCGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATggg                                                                 <  2:1290249/140‑1 (MQ=255)
                                                                     aCCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGt                                                                <  2:369834/140‑1 (MQ=255)
                                                                       cGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTaa                                                              >  2:258905/1‑140 (MQ=255)
                                                                        gTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAAc                                                             >  1:764013/1‑140 (MQ=255)
                                                                         tCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGt                                                                <  1:1576107/136‑1 (MQ=255)
                                                                         tCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGt                                                                >  2:1576107/1‑136 (MQ=255)
                                                                         tCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACg                                                            >  1:1033863/1‑140 (MQ=255)
                                                                         tCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACg                                                            >  1:1302626/1‑140 (MQ=255)
                                                                         tCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACg                                                            >  1:575623/1‑140 (MQ=255)
                                                                                 cGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAAt                                                    >  2:1413651/1‑140 (MQ=255)
                                                                                 cGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAAt                                                    >  1:543715/1‑140 (MQ=255)
                                                                                  gCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATc                                                   <  2:1033863/140‑1 (MQ=255)
                                                                                  gCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATc                                                   <  1:291172/140‑1 (MQ=255)
                                                                                   cAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCg                                                  >  2:791646/1‑140 (MQ=255)
                                                                                   cAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCg                                                  >  2:452080/1‑140 (MQ=255)
                                                                                   cAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCg                                                  >  2:278402/1‑140 (MQ=255)
                                                                                     aCGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGc                                                <  1:955085/140‑1 (MQ=255)
                                                                                     aCGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGc                                                <  1:554925/140‑1 (MQ=255)
                                                                                      agTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCa                                               <  2:637956/139‑1 (MQ=255)
                                                                                            aCCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAacacca                                         <  2:952300/140‑1 (MQ=255)
                                                                                                aCCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAacaccacacc                                     <  2:1346216/140‑1 (MQ=255)
                                                                                                aCCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAacaccacacc                                     <  1:278402/140‑1 (MQ=255)
                                                                                                aCCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAacaccacacc                                     <  2:663805/140‑1 (MQ=255)
                                                                                                    tCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCcgcg                                 >  2:962794/1‑140 (MQ=255)
                                                                                                    tCAGATTAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCcgcg                                 <  2:268663/140‑1 (MQ=255)
                                                                                                          tAAAATACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTa                           >  1:265035/1‑140 (MQ=255)
                                                                                                            aaaTACCCTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAAt                         >  2:87645/1‑140 (MQ=255)
                                                                                                                  ccTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGTAACACCACACCCGCGGTGGTAATGGCcgc                   >  1:319187/1‑140 (MQ=255)
                                                                                                                  ccTTTAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCcgc                   >  2:873351/1‑140 (MQ=255)
                                                                                                                    tttAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCAATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGa                 <  2:169216/140‑1 (MQ=255)
                                                                                                                      tAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACg               >  1:824180/1‑140 (MQ=255)
                                                                                                                      tAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACg               >  2:655638/1‑140 (MQ=255)
                                                                                                                      tAAATAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACg               >  1:553094/1‑140 (MQ=255)
                                                                                                                       aaaTAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACgg              >  1:298683/1‑140 (MQ=255)
                                                                                                                       aaaTAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACgg              >  1:934273/1‑140 (MQ=255)
                                                                                                                       aaaTAGCCAGAAGCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACgg              <  1:101494/140‑1 (MQ=255)
                                                                                                                                   gCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACGGTGGCAGAGCCCa  >  1:1513309/1‑140 (MQ=255)
                                                                                                                                   gCCATGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACGGTGGCAGAGCCCa  >  1:1341033/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
TTTCAGTGCAATACGGCGTTAATGGCTAACACGCCCAGCAAACCCATAATAGAAATAAGGGTTTCCATCACCGTCCAGGTACGCAACGTTTCACCAACCGTCAGATTAAAATACCCTTTAAATAGCCAGAAGCCAGGGTCGTTTACGTGTGACGCGATCACGCTGCCCGCACCGGTTGCCAGTACCATTAAAGCGGGATCGGCATGGGTAACGTTGATAATCGGCAACACCACACCCGCGGTGGTAATGGCCGCGACGGTGGCAGAGCCCA  >  NC_000913/4491204‑4491474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A