Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F48 I1 R1
|
82 |
50.4 |
1709896 |
99.0% |
1692797 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,261,774 |
G→T |
G215G (GGC→GGA) |
tdcE ← |
2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,261,774 | 0 | G | T | 100.0%
| 210.1
/ NA
| 60 | G215G (GGC→GGA) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (22/38); total (22/38) |
TGCACCGCTTCCTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCGCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTGGTAAACCGG > NC_000913/3261637‑3261907
|
tGCACCGCTTCCTGCGCATTCTTCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTcc > 2:614273/1‑140 (MQ=255)
gCACCGCTTCCTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCt > 1:828185/1‑140 (MQ=255)
gCTTCCTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTc < 2:218326/140‑1 (MQ=255)
ttCCTGCGCATTCTGGGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCa < 1:25185/140‑1 (MQ=255)
ccTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGTCGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGa > 2:440033/1‑140 (MQ=255)
ccTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGa < 2:615409/140‑1 (MQ=255)
ccTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGa > 1:646046/1‑140 (MQ=255)
ccTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATACTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGa < 1:693158/140‑1 (MQ=255)
cTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGAc < 1:144434/140‑1 (MQ=255)
gcgcATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACga < 2:36564/140‑1 (MQ=255)
gcgcATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACga < 2:37163/140‑1 (MQ=255)
gcgcATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACga > 1:274442/1‑140 (MQ=255)
tCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTgg > 2:227244/1‑140 (MQ=255)
ggCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCa > 2:587966/1‑140 (MQ=255)
atatCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAg < 1:614273/140‑1 (MQ=255)
atCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGtt < 2:707365/140‑1 (MQ=255)
atCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGtt < 2:415937/140‑1 (MQ=255)
aaaGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTcgc < 1:285203/140‑1 (MQ=255)
aGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGt > 1:117450/1‑140 (MQ=255)
ccATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTc < 2:548350/140‑1 (MQ=255)
aatatTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCa < 2:646046/139‑1 (MQ=255)
atatTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCAc > 2:479747/1‑140 (MQ=255)
tatTTCGCCGCCATTTCCTGAATCTACAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACg < 2:455861/140‑1 (MQ=255)
tatTTCGCCGCCATTTCCTGAATCTACAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACg > 1:455861/1‑140 (MQ=255)
tttCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTa < 1:349893/140‑1 (MQ=255)
tttCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTa < 2:171386/140‑1 (MQ=255)
tttCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTa < 2:836304/140‑1 (MQ=255)
ccgccATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGa > 2:832717/1‑140 (MQ=255)
cgccATTTCCTGAATCTGCAACATCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGAt < 2:722678/140‑1 (MQ=255)
ccATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATaa > 2:418103/1‑140 (MQ=255)
cATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAAc < 1:414643/140‑1 (MQ=255)
cATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAAc < 1:337859/140‑1 (MQ=255)
cATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAAc < 1:780230/140‑1 (MQ=255)
aaTTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAAc < 2:675452/139‑1 (MQ=255)
tttCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGTCGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTg < 1:440033/140‑1 (MQ=255)
ttCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGa < 2:614209/140‑1 (MQ=255)
ccTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATg < 1:227244/140‑1 (MQ=255)
aaaTCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGAGTGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCa < 2:665358/139‑1 (MQ=255)
gCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAgc > 1:76099/1‑140 (MQ=255)
gcgcATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTAcg < 1:479747/140‑1 (MQ=255)
cgcATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTAcgc > 2:68515/1‑140 (MQ=255)
cgcATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTAcgc > 2:538228/1‑140 (MQ=255)
tGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACgcggcg > 2:216693/1‑140 (MQ=255)
aTGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGt < 2:607514/140‑1 (MQ=255)
aTGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGt < 2:549650/140‑1 (MQ=255)
aTGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGt < 1:68515/140‑1 (MQ=255)
gCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATg < 1:752573/140‑1 (MQ=255)
tcctcACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATgcg > 1:650088/1‑140 (MQ=255)
tcACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGccc < 1:587966/140‑1 (MQ=255)
cACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCa < 2:117450/140‑1 (MQ=255)
cACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCa < 2:12386/140‑1 (MQ=255)
cACGCAGACGGATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCATTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGTGATAGTCACCGATAATGCGCCCa < 2:232962/140‑1 (MQ=255)
gATGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGc > 1:3465/1‑140 (MQ=255)
aTGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGcc < 2:296326/140‑1 (MQ=255)
aTGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGcc < 2:828185/140‑1 (MQ=255)
aTGGTGGCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGcc > 1:400551/1‑140 (MQ=255)
gCTTCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTgg > 1:671858/1‑140 (MQ=255)
tttCCAGATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCATATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTGGt < 2:274442/139‑1 (MQ=255)
gATCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTGGTAAACCg > 1:756679/1‑140 (MQ=255)
aTCCTCTCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTGGTAAACCgg > 2:525107/1‑140 (MQ=255)
|
TGCACCGCTTCCTGCGCATTCTGCGCCGGGCGAGAGATATCAAAGCCATATTTCGCCGCCATTTCCTGAATCTGCAACAGCGCATGACGATGCTCTGCCAGCTCCTCACGCAGACGGATGGTGGCTTCCAGATCCTCGCCTTTTTCCAGACGAGACTGGAGATCGGCAAATTGCAGTTCGCGTTCACGTACCAGATAACTGATGCCATACAGCGCTACGCGGCGATAGTCACCGATAATGCGCCCACGGCCATAGCCATCTGGTAAACCGG > NC_000913/3261637‑3261907
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A