Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F48 I1 R1	82	50.4	1709896	99.0%	1692797	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,479,084	C→A	G152C (GGC→TGC)	yjgM ←	putative acetyltransferase YjgM

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,479,084	0	C	A	100.0%	129.1 / NA	37	G152C (GGC→TGC)	yjgM	putative acetyltransferase YjgM
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (20/17); total (20/17)

TAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAGGCCAGTT  >  NC_000913/4478949‑4479218

tAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGAAGCAAAgc                                                                                                                                    <  2:139120/140‑1 (MQ=255)

  aGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCA‑TTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCa                                                                                                                                 <  1:55995/140‑1 (MQ=255)

        tCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTc                                                                                                                            >  1:325318/1‑140 (MQ=255)

                caTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCt                                                                                                                    <  1:475364/140‑1 (MQ=255)

                aaTCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCt                                                                                                                    <  2:39166/139‑1 (MQ=255)

                  tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCa                                                                                                                  >  1:498834/1‑140 (MQ=255)

                      gCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGc                                                                                                              >  1:643791/1‑140 (MQ=255)

                       cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGcc                                                                                                             >  1:456784/1‑140 (MQ=255)

                       cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGcc                                                                                                             >  2:797082/1‑140 (MQ=255)

                         aaaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCa                                                                                                           <  2:654642/139‑1 (MQ=255)

                               aaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCt                                                                                                     >  1:218675/1‑140 (MQ=255)

                                aaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTc                                                                                                    >  1:129040/1‑140 (MQ=255)

                                    tacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaa                                                                                                <  2:349141/140‑1 (MQ=255)

                                          gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCa                                                                                          >  1:80595/1‑140 (MQ=255)

                                           ttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaa                                                                                         >  1:541126/1‑140 (MQ=255)

                                               tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGc                                                                                     <  1:541685/140‑1 (MQ=255)

                                                   cGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTcc                                                                                 >  1:98906/1‑140 (MQ=255)

                                                     aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCtt                                                                               >  2:826200/1‑140 (MQ=255)

                                                        gCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTaa                                                                            <  1:30486/140‑1 (MQ=255)

                                                         cccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCACATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCa                                                                                          <  1:362598/125‑1 (MQ=255)

                                                         cccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCACATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCa                                                                                          >  2:362598/1‑125 (MQ=255)

                                                           cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCCTAGTCGATATGCTCAAAACCCAAATGCTCATAAAGCGCAATGGCTTCCTTTaaaaa                                                                         >  2:309799/1‑140 (MQ=255)

                                                                 ttGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGt                                                                   <  2:456784/140‑1 (MQ=255)

                                                                 ttGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGt                                                                   <  2:129040/140‑1 (MQ=255)

                                                                              cATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATag                                                      <  2:569049/140‑1 (MQ=255)

                                                                                tttttttAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATagca                                                    <  2:122364/140‑1 (MQ=255)

                                                                                          attCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGaaa                                          <  2:87579/139‑1 (MQ=255)

                                                                                             cgcgCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAAccc                                       >  2:279392/1‑140 (MQ=255)

                                                                                             cgcgCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAAccc                                       >  1:347784/1‑140 (MQ=255)

                                                                                                             ttCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCt                       <  2:498834/140‑1 (MQ=255)

                                                                                                               cacaATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTcc                     >  2:98289/1‑140 (MQ=255)

                                                                                                                  aaTCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATc                  <  1:721957/140‑1 (MQ=255)

                                                                                                                         aTGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCTCCTGCTCCATCGCCATTa           <  2:347784/140‑1 (MQ=255)

                                                                                                                          tGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTaa          >  2:463743/1‑140 (MQ=255)

                                                                                                                            gCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAgg        >  1:638067/1‑140 (MQ=255)

                                                                                                                              ccGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAGGcc      >  2:748802/1‑140 (MQ=255)

                                                                                                                                gTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAGGCCAg    >  1:125221/1‑140 (MQ=255)

                                                                                                                                  gcagcaAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAGGCCAGtt  >  1:722051/1‑140 (MQ=255)

TAAGGCATTCATGTCACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAGCGGTCGTTTCCAGATAGCAGCGTTTGAAACCCATCTCTCGCGCCTGCTCCATCGCCATTAAGGCCAGTT  >  NC_000913/4478949‑4479218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A