Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,998,609	G→A	H74Y (CAC→TAC)	ygeQ ←	protein YgeQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,998,609	0	G	A	100.0%	303.6 / NA	85	H74Y (CAC→TAC)	ygeQ	protein YgeQ
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/55); total (30/55)

TGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATT  >  NC_000913/2998473‑2998740

tGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGct                                                                                                                                  <  2:1295493/140‑1 (MQ=255)

  ggTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTTGctct                                                                                                                                >  1:987504/1‑140 (MQ=255)

  ggTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGctct                                                                                                                                >  1:320552/1‑140 (MQ=255)

  ggTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGctct                                                                                                                                >  1:1332629/1‑140 (MQ=255)

     ttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTa                                                                                                                             >  2:1367192/1‑140 (MQ=255)

     ttCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTa                                                                                                                             >  1:803191/1‑140 (MQ=255)

       cTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTAtt                                                                                                                           >  2:1127733/1‑140 (MQ=255)

       cTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTAtt                                                                                                                           >  1:211022/1‑140 (MQ=255)

          ccGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCa                                                                                                                        <  2:224521/140‑1 (MQ=255)

          ccGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCa                                                                                                                        <  1:51292/140‑1 (MQ=255)

            gCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCAtt                                                                                                                      >  1:163151/1‑140 (MQ=255)

             cTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCAttt                                                                                                                     <  2:884667/140‑1 (MQ=255)

              tGTTTTATCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGGTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCAtttt                                                                                                                    >  2:732817/1‑140 (MQ=255)

                       aTCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTgg                                                                                                           <  2:182772/140‑1 (MQ=255)

                       aTCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTgg                                                                                                           <  1:822069/140‑1 (MQ=255)

                       aTCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTgg                                                                                                           <  1:612833/140‑1 (MQ=255)

                           tCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGa                                                                                                       <  2:163151/140‑1 (MQ=255)

                            cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAg                                                                                                      <  1:100019/140‑1 (MQ=255)

                            cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAg                                                                                                      <  2:11630/140‑1 (MQ=255)

                            cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAg                                                                                                      <  1:1085336/140‑1 (MQ=255)

                                 gTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAAt                                                                                                 <  1:1200546/140‑1 (MQ=255)

                                   aGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCa                                                                                               <  2:757057/140‑1 (MQ=255)

                                   aGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCa                                                                                               >  2:799381/1‑140 (MQ=255)

                                     aaGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                             <  2:1332629/140‑1 (MQ=255)

                                     aaGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                             <  1:68430/140‑1 (MQ=255)

                                     aaGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                             <  2:795831/140‑1 (MQ=255)

                                     aaGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                             >  1:984581/1‑140 (MQ=255)

                                      aGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTCCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCagaa                                                                                            <  2:762475/140‑1 (MQ=255)

                                          aGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACg                                                                                        <  2:211022/140‑1 (MQ=255)

                                            aaTAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGTTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGAt                                                                                      <  1:412979/140‑1 (MQ=255)

                                            aaTAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGAt                                                                                      >  2:673113/1‑140 (MQ=255)

                                            aaTAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGAt                                                                                      <  2:365233/140‑1 (MQ=255)

                                            aaTAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGAt                                                                                      <  2:394979/140‑1 (MQ=255)

                                              tAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATaa                                                                                    >  1:1332746/1‑140 (MQ=255)

                                               aaaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAt                                                                                   <  2:745595/140‑1 (MQ=255)

                                               aaaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAt                                                                                   <  2:1332380/140‑1 (MQ=255)

                                                aaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAtt                                                                                  <  1:123075/140‑1 (MQ=255)

                                                      ccccAGGGTTTCTCCGTCAACGTTATCTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATGAgg                                                                               >  2:600422/1‑137 (MQ=255)

                                                      ccccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAgg                                                                               <  1:600422/137‑1 (MQ=255)

                                                      ccccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATa                                                                            >  1:548413/1‑140 (MQ=255)

                                                      ccccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATa                                                                            >  2:307898/1‑140 (MQ=255)

                                                      ccccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATa                                                                            <  1:846781/140‑1 (MQ=255)

                                                       cccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATAc                                                                           <  2:131927/140‑1 (MQ=255)

                                                           gggTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTAt                                                                       <  2:803191/140‑1 (MQ=255)

                                                            ggTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATc                                                                      <  1:1367192/140‑1 (MQ=255)

                                                             gTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCt                                                                     <  1:203022/140‑1 (MQ=255)

                                                                tctcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAt                                                                                   <  1:1230919/123‑1 (MQ=255)

                                                                tctcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAt                                                                                   >  2:1230919/1‑123 (MQ=255)

                                                                 ctcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGAt                                                                 >  1:1349958/1‑140 (MQ=255)

                                                                 ctcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGAt                                                                 >  1:1442013/1‑140 (MQ=255)

                                                                 ctcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGAATACTTATCTGGAt                                                                 >  1:735754/1‑140 (MQ=255)

                                                                     gTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTaa                                                             <  2:1146375/140‑1 (MQ=255)

                                                                      tCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAAc                                                            <  2:666158/140‑1 (MQ=255)

                                                                      tCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAAc                                                            >  2:119756/1‑140 (MQ=255)

                                                                       cAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGCTACTTATCTGGATTTAACg                                                           <  2:1177592/140‑1 (MQ=255)

                                                                       cAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACg                                                           <  2:167620/140‑1 (MQ=255)

                                                                       aaaCGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTTGTATAGAAGCTCTATAGTTCATTTTGTATTTTGGCTGAGTGAATCAGAAGACGATAATTAGGATCCTTATCTGGATTTAACg                                                           <  2:1045460/139‑1 (MQ=255)

                                                                            ttAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaa                                                      <  2:552901/140‑1 (MQ=255)

                                                                            ttAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaa                                                      <  1:861362/140‑1 (MQ=255)

                                                                            ttAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaa                                                      <  2:320552/140‑1 (MQ=255)

                                                                             tAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaat                                                     <  2:1537164/140‑1 (MQ=255)

                                                                              aaCTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaata                                                    <  1:927761/140‑1 (MQ=255)

                                                                                      tgtgtTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTAt                                            >  1:1328306/1‑140 (MQ=255)

                                                                                        tgtTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCt                                          >  2:1420631/1‑140 (MQ=255)

                                                                                             tCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgc                                     <  2:58409/140‑1 (MQ=255)

                                                                                                  tAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGccc                                <  2:548413/140‑1 (MQ=255)

                                                                                                    aTGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGccccc                              <  1:16848/140‑1 (MQ=255)

                                                                                                     tGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCg                             <  1:283186/140‑1 (MQ=255)

                                                                                                         aGCAATCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGa                         >  1:684894/1‑140 (MQ=255)

                                                                                                              tCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTaa                    >  2:1189787/1‑140 (MQ=255)

                                                                                                              tCCTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTaa                    <  1:1420631/140‑1 (MQ=255)

                                                                                                               ccTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAg                   >  2:1220737/1‑140 (MQ=255)

                                                                                                                cTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCGGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                  <  1:436992/140‑1 (MQ=255)

                                                                                                                cTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                  <  2:1437197/140‑1 (MQ=255)

                                                                                                                cTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                  <  2:684894/140‑1 (MQ=255)

                                                                                                                cTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                  <  2:630326/140‑1 (MQ=255)

                                                                                                                cTTGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                  >  2:360426/1‑140 (MQ=255)

                                                                                                                  tGAATTTCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAAt                <  1:673113/140‑1 (MQ=255)

                                                                                                                        tCGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTaaa          >  2:1088253/1‑140 (MQ=255)

                                                                                                                         cGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAAt         >  1:639776/1‑140 (MQ=255)

                                                                                                                         cGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAAt         <  2:661980/140‑1 (MQ=255)

                                                                                                                         cGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAAt         >  1:1523667/1‑140 (MQ=255)

                                                                                                                         cGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAAt         <  2:1272630/140‑1 (MQ=255)

                                                                                                                         cGTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAAt         >  1:116125/1‑140 (MQ=255)

                                                                                                                          gTCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATa        <  2:1523667/140‑1 (MQ=255)

                                                                                                                           tCTTTGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATAc       >  1:532771/1‑140 (MQ=255)

                                                                                                                               tGGTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCTCCCGTGGAATTAAGAATGTTAAATACAGAt   <  2:987504/140‑1 (MQ=255)

                                                                                                                                ggTATAGTAGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGAtt  <  2:984581/140‑1 (MQ=255)

TGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATT  >  NC_000913/2998473‑2998740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A