Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,071,129 C→A G39V (GGT→GTT)  fbaA ← fructose‑bisphosphate aldolase class II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,071,1290CA100.0% 284.1 / NA 82G39V (GGT→GTT) fbaAfructose‑bisphosphate aldolase class II
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (41/41);  total (41/41)

TAGCAGCACCCTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTACCGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTC  >  NC_000913/3070995‑3071264
                                                                                                                                      |                                                                                                                                       
tAGCAGCACCCTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAacgacg                                                                                                                                    <  1:951747/140‑1 (MQ=255)
   cagcaCCCTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAg                                                                                                                                 >  1:699564/1‑140 (MQ=255)
      cccaccccGGAACGTCAGATTTCACGCCCTTACCAGCGATAAAGCAAGCACCACCGTAGGAGAACTGAACGATAACCGGCCCTTTAACTTTAGCAGCGGTTTCCTGTACGGCGTTGATGTTTTCAGTAACTACTCAAttt                                                                                                                              >  2:923926/8‑140 (MQ=255)
        cccTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTat                                                                                                                            >  2:208355/1‑139 (MQ=255)
        cccTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTAc                                                                                                                            >  2:651551/1‑140 (MQ=255)
        cccTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTAc                                                                                                                            >  2:371124/1‑140 (MQ=255)
        cccTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTAc                                                                                                                            >  2:1035868/1‑140 (MQ=255)
        cccTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTAc                                                                                                                            >  2:1200090/1‑140 (MQ=255)
          cTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTActg                                                                                                                          <  1:1542625/140‑1 (MQ=255)
             cGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTActgctg                                                                                                                       >  1:1472833/1‑140 (MQ=255)
              ggAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTgg                                                                                                                      <  1:291166/140‑1 (MQ=255)
              ggAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTgg                                                                                                                      <  1:1369363/140‑1 (MQ=255)
                aaCGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCa                                                                                                                    <  1:208355/140‑1 (MQ=255)
                aaCGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCa                                                                                                                    >  1:567623/1‑140 (MQ=255)
                   gTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTg                                                                                                                 <  1:1200090/140‑1 (MQ=255)
                     aaGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCg                                                                                                               <  2:592065/139‑1 (MQ=255)
                      aGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGa                                                                                                              <  1:1538267/140‑1 (MQ=255)
                        aTTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAg                                                                                                            <  2:1305654/140‑1 (MQ=255)
                              cGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGttt                                                                                                      >  2:30239/1‑140 (MQ=255)
                                 cTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCTGTAACGACGCAGTTTACAGCTGGCAGTGCGAAGTTGTTTTCt                                                                                                   >  2:239763/1‑140 (MQ=255)
                                    tACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCtttt                                                                                                >  1:877393/1‑140 (MQ=255)
                                     aCCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAATTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTg                                                                                               <  2:1187225/140‑1 (MQ=255)
                                     aCCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTg                                                                                               <  2:1470705/140‑1 (MQ=255)
                                           gATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCt                                                                                         >  2:1496689/1‑140 (MQ=255)
                                           gATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCt                                                                                         >  1:627677/1‑140 (MQ=255)
                                            aTAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCTGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCATTGCGAAGTTGTTTTCTTTTGCTACCTg                                                                                        <  2:1039316/140‑1 (MQ=255)
                                             tAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTgg                                                                                       <  1:788724/140‑1 (MQ=255)
                                               aaGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGaa                                                                                     <  1:1497310/140‑1 (MQ=255)
                                               aaGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGaa                                                                                     <  1:888355/140‑1 (MQ=255)
                                                    agtaccaccGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACtt                                                                                >  1:1102325/4‑140 (MQ=255)
                                                    aGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACtt                                                                                >  2:1121207/1‑140 (MQ=255)
                                                    aGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACtt                                                                                >  1:716876/1‑140 (MQ=255)
                                                    aGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACtt                                                                                >  2:1580834/1‑140 (MQ=255)
                                                     gCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACttt                                                                               >  2:770128/1‑140 (MQ=255)
                                                     gCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACttt                                                                               >  1:1495214/1‑140 (MQ=255)
                                                     gCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACttt                                                                               <  2:468712/140‑1 (MQ=255)
                                                      caccacCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTc                                                                              >  2:1446177/1‑140 (MQ=255)
                                                        ccaccGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTg                                                                            >  1:672969/1‑140 (MQ=255)
                                                         caccGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGt                                                                           <  1:1251594/140‑1 (MQ=255)
                                                            cGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACg                                                                        <  2:1472833/140‑1 (MQ=255)
                                                                      cTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCat                                                              >  2:1392181/1‑139 (MQ=255)
                                                                      cTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAg                                                              >  1:469002/1‑140 (MQ=255)
                                                                       tGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGt                                                             >  1:247196/1‑140 (MQ=255)
                                                                         aaCGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGCAAACTTTCTGTACGTCATCACCTGTGa                                                           >  1:873269/1‑140 (MQ=255)
                                                                         aaCGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTgt                                                           >  2:149149/1‑139 (MQ=255)
                                                                          aCGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGAt                                                          <  2:469002/140‑1 (MQ=255)
                                                                               aaCCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGc                                                     <  1:874370/140‑1 (MQ=255)
                                                                               aaCCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGc                                                     <  1:1121207/140‑1 (MQ=255)
                                                                                aCCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGcc                                                    <  1:1446177/140‑1 (MQ=255)
                                                                                aCCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACAGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGcc                                                    <  1:239763/140‑1 (MQ=255)
                                                                                 ccGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCa                                                   >  2:970408/1‑140 (MQ=255)
                                                                                   ggCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAgg                                                 >  1:1251522/1‑140 (MQ=255)
                                                                                    gcgcTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTTTACGTCATCACCAGTGATTACGCCAGGt                                                >  1:313502/1‑140 (MQ=255)
                                                                                          tAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACg                                          <  2:567623/140‑1 (MQ=255)
                                                                                                 agcagcGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGGGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCaa                                   >  1:989210/1‑140 (MQ=255)
                                                                                                 agcagcGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCaa                                   <  2:1204028/140‑1 (MQ=255)
                                                                                                 agcagcGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCaa                                   <  1:770128/140‑1 (MQ=255)
                                                                                                 agcagcGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCaa                                   >  1:256073/1‑140 (MQ=255)
                                                                                                      cGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATc                              >  1:630758/1‑140 (MQ=255)
                                                                                                      cGGTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATc                              <  2:247196/140‑1 (MQ=255)
                                                                                                        gTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCtt                            >  1:1415892/1‑140 (MQ=255)
                                                                                                        gTTTCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGACATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCtt                            >  2:1404891/1‑140 (MQ=255)
                                                                                                         tttCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTa                           <  2:1495214/140‑1 (MQ=255)
                                                                                                           tCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTGCGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGa                         <  2:716876/140‑1 (MQ=255)
                                                                                                           tCCAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGa                         >  1:45946/1‑140 (MQ=255)
                                                                                                            ccAGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGAc                        >  1:447424/1‑140 (MQ=255)
                                                                                                              aGTCCGGCGTTGATGGAGTCAGTAACGCCGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTTCCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACAt                      <  1:982476/140‑1 (MQ=255)
                                                                                                              aGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACAt                      <  2:699564/140‑1 (MQ=255)
                                                                                                              aGTACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACAt                      <  2:1522752/140‑1 (MQ=255)
                                                                                                                tACGGCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGt                    <  2:145447/140‑1 (MQ=255)
                                                                                                                   ggCGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGACATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGtctc                 <  1:1404891/140‑1 (MQ=255)
                                                                                                                   ggCGTTGATGGAGTCAGTAACGACGCAATTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGtctc                 <  1:970408/140‑1 (MQ=255)
                                                                                                                     cGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCtt               >  2:272705/1‑140 (MQ=255)
                                                                                                                     cGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCtt               >  1:1405397/1‑140 (MQ=255)
                                                                                                                     cGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCtt               >  1:1411849/1‑140 (MQ=255)
                                                                                                                     cGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCtt               <  1:371124/140‑1 (MQ=255)
                                                                                                                     cGTTGATGGAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCtt               >  1:1240557/1‑140 (MQ=255)
                                                                                                                            ggAGTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGt        <  1:272705/140‑1 (MQ=255)
                                                                                                                               gTCAGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtc     >  1:1443294/1‑140 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  >  1:423716/1‑140 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  <  2:627677/140‑1 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  <  2:447424/140‑1 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  <  1:1392181/140‑1 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  <  1:1035868/140‑1 (MQ=255)
                                                                                                                                  aGTAACGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTAtcgtc  <  2:1405397/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TAGCAGCACCCTGCGGAACGTCAGATTTCACGCCTTTACCAGCGATAAAGGAAGCACCACCGTTGGAGAACTGAACGATAACCGGCGCTTTAACTTTAGCAGCGGTTTCCAGTACGGCGTTGATGGAGTCAGTACCGACGCAGTTTACTGCTGGCAGTGCGAAGTTGTTTTCTTTTGCTACCTGGAAAACTTTCTGTACGTCATCACCAGTGATTACGCCAGGTTTTACGAAATCAAAAATCTTAGACATGTCTCTTGTCCTGTATCGTC  >  NC_000913/3070995‑3071264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A