Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,978,030 C→A P169H (CCT→CAT)  rffT → 4‑acetamido‑4,6‑dideoxy‑D‑galactose transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,978,0300CA100.0% 266.5 / NA 75P169H (CCT→CAT) rffT4‑acetamido‑4,6‑dideoxy‑D‑galactose transferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (38/37);  total (38/37)

TTTTACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCCTTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGATACGGT  >  NC_000913/3977897‑3978162
                                                                                                                                     |                                                                                                                                    
ttttACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCt                                                                                                                                <  2:561484/140‑1 (MQ=255)
ttttACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCt                                                                                                                                >  2:501314/1‑140 (MQ=255)
ttttACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCt                                                                                                                                <  1:286291/140‑1 (MQ=255)
ttttACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCt                                                                                                                                <  1:622865/140‑1 (MQ=255)
          tACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATg                                                                                                                      >  1:1029424/1‑140 (MQ=255)
          tACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATg                                                                                                                      >  1:1087806/1‑140 (MQ=255)
          tACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATg                                                                                                                      >  2:1221050/1‑140 (MQ=255)
            cGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGGTGGACCATTCGCTCAATACGATGGc                                                                                                                    >  2:636192/1‑140 (MQ=255)
               cGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGaa                                                                                                                 >  2:200094/1‑140 (MQ=255)
                 ccTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACg                                                                                                               >  2:1144327/1‑140 (MQ=255)
                   tGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGAt                                                                                                             >  1:290820/1‑140 (MQ=255)
                    ggCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATc                                                                                                            >  2:704294/1‑140 (MQ=255)
                    ggCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATc                                                                                                            >  1:792394/1‑140 (MQ=255)
                      cgcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCgg                                                                                                          >  1:1013034/1‑140 (MQ=255)
                      cgcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCgg                                                                                                          >  1:345336/1‑140 (MQ=255)
                      cgcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCgg                                                                                                          >  1:557241/1‑140 (MQ=255)
                       gcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGc                                                                                                         <  1:200094/140‑1 (MQ=255)
                       gcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGc                                                                                                         >  2:86019/1‑140 (MQ=255)
                       gcAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGc                                                                                                         <  1:1066533/140‑1 (MQ=255)
                           aaGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACg                                                                                                     <  2:1344112/140‑1 (MQ=255)
                             gCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTg                                                                                                   <  2:792394/140‑1 (MQ=255)
                               gAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGaa                                                                                                 <  2:1418442/140‑1 (MQ=255)
                                aGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAg                                                                                                >  2:150390/1‑140 (MQ=255)
                                    ggCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGaa                                                                                            <  2:557241/140‑1 (MQ=255)
                                    ggCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGaa                                                                                            <  1:1308432/140‑1 (MQ=255)
                                       tgtgTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAAt                                                                                         <  1:80041/140‑1 (MQ=255)
                                            aTTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCa                                                                                    <  2:1087806/140‑1 (MQ=255)
                                            aTTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCa                                                                                    <  2:345336/140‑1 (MQ=255)
                                                   aCCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggt                                                                             >  1:1233323/1‑140 (MQ=255)
                                                   aCCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggt                                                                             >  1:681409/1‑140 (MQ=255)
                                                   aCCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggt                                                                             >  1:941926/1‑140 (MQ=255)
                                                   aCCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGCGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggt                                                                             >  1:1210882/1‑140 (MQ=255)
                                                    cccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtg                                                                            <  2:855039/140‑1 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  1:863642/1‑140 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  1:740954/1‑140 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  1:999827/1‑140 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  1:317340/1‑140 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  1:547467/1‑140 (MQ=255)
                                                     ccGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCtggtgg                                                                           >  2:1413979/1‑140 (MQ=255)
                                                        cggcgATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGa                                                                        >  1:993066/1‑140 (MQ=255)
                                                        cggcgATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGa                                                                        <  2:290820/140‑1 (MQ=255)
                                                        cggcgATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGa                                                                        >  1:219431/1‑140 (MQ=255)
                                                              tttGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCg                                                                  <  2:228581/140‑1 (MQ=255)
                                                                tGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGc                                                                <  1:1221050/140‑1 (MQ=255)
                                                                  aGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCAGGCGa                                                              <  2:1029424/140‑1 (MQ=255)
                                                                     ttttttGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCg                                                           <  2:1210882/140‑1 (MQ=255)
                                                                     ttttttGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCg                                                           <  2:1258067/140‑1 (MQ=255)
                                                                        tttGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCgcag                                                        >  1:1062695/1‑140 (MQ=255)
                                                                            ccAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAAt                                                    <  2:1194485/140‑1 (MQ=255)
                                                                              aaaaCGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGa                                                  <  1:150390/140‑1 (MQ=255)
                                                                               aaaCGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAg                                                 <  2:1062695/140‑1 (MQ=255)
                                                                               aaaCGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAg                                                 >  1:1289961/1‑140 (MQ=255)
                                                                                aaCGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGc                                                <  2:547467/140‑1 (MQ=255)
                                                                                 aCGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCa                                               <  1:1270474/140‑1 (MQ=255)
                                                                                 aCGCACACAAAGGTGCGGGGGGAACTGCGGTGCTTCCGGACGCGGATGGACAATTCGAACAATTCGATGGCGAACGTTCGGCAAGGTGAAGGGAAAATGACCATTCTGATGGGGACCTCCGGCGACCGCAGCCATGAGCa                                               <  2:751467/140‑1 (MQ=255)
                                                                                   gCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCata                                             <  2:1289961/140‑1 (MQ=255)
                                                                                      cccAAAGGCGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATtg                                          >  2:1087659/1‑140 (MQ=255)
                                                                                       ccAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATtgc                                         >  2:602048/1‑140 (MQ=255)
                                                                                                cGGGGCGAACTTCTGTTCTTCCCGACGCGGATGGATCATTCGCTCAATACGTTGGCGAACGATCGGCAACGTGATGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGTGCGCAGCAATGAGCTTATTGCTGCCTTgcg                                >  2:76272/1‑140 (MQ=255)
                                                                                                cGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTgcg                                <  2:1013034/140‑1 (MQ=255)
                                                                                                cGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTgcg                                <  1:704294/140‑1 (MQ=255)
                                                                                                 ggggCGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTgcgc                               >  2:774301/1‑140 (MQ=255)
                                                                                                     cGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGcct                           >  2:1251343/1‑139 (MQ=255)
                                                                                                     cGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCg                           <  2:1546847/140‑1 (MQ=255)
                                                                                                     cGAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCg                           >  1:1288417/1‑140 (MQ=255)
                                                                                                      gAACTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGt                          <  2:740954/140‑1 (MQ=255)
                                                                                                        aCTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTtc                        >  1:531136/1‑140 (MQ=255)
                                                                                                        aCTGCTGTTCTTCCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTtc                        >  2:1399637/1‑140 (MQ=255)
                                                                                                                tcttcCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCaa                <  1:1144327/140‑1 (MQ=255)
                                                                                                                  ttcCCGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAAtt              <  1:501314/140‑1 (MQ=255)
                                                                                                                    cccGACGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTg            >  1:80979/1‑140 (MQ=255)
                                                                                                                        aCGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGa        <  2:999827/140‑1 (MQ=255)
                                                                                                                        aCGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGa        <  2:317340/140‑1 (MQ=255)
                                                                                                                        aCGCGGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGa        <  1:781111/140‑1 (MQ=255)
                                                                                                                         cgcgGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGAt       >  1:1019886/1‑140 (MQ=255)
                                                                                                                           cgGATGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGATAc     <  2:993066/140‑1 (MQ=255)
                                                                                                                              aTGGACCATTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGATACGGt  <  2:863642/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
TTTTACCCACTACGTCGCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTGCCACCCGCGGCGATTTGAGCTTTTTTGCCAAAACGCACCCAAAGGTGCGGGGCGAACTGCTGTTCTTCCCGACGCGGATGGACCCTTCGCTCAATACGATGGCGAACGATCGGCAACGTGAAGGGAAAATGACCATTCTGGTGGGGAACTCCGGCGACCGCAGCAATGAGCATATTGCTGCCTTGCGCGCCGTTCATCAGCAATTTGGCGATACGGT  >  NC_000913/3977897‑3978162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A