Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,088,713	A→T	R381R (CGT→CGA)	frvR ←	putative transcriptional regulator FrvR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,088,713	0	A	T	100.0%	382.1 / NA	108	R381R (CGT→CGA)	frvR	putative transcriptional regulator FrvR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (71/37); total (71/37)

Only 100 of 110 total aligned reads displayed.

GTTCGATACCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTACGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCAAAAT  >  NC_000913/4088577‑4088849

gTTCGATACCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCgg                                                                                                                                       >  1:425970/1‑140 (MQ=255)

  tCGATACCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGc                                                                                                                                     >  2:571023/1‑140 (MQ=255)

     aTACCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCaat                                                                                                                                  <  2:1393294/140‑1 (MQ=255)

       aCCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCaataa                                                                                                                                <  1:571023/140‑1 (MQ=255)

           gCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACTGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTAc                                                                                                                            >  1:599248/1‑140 (MQ=255)

           gCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTAc                                                                                                                            >  2:1093075/1‑140 (MQ=255)

           gCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTAc                                                                                                                            >  1:138694/1‑140 (MQ=255)

           gCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGGTATTAATGATCAATAACGGCTCAATCTCTTCGCGGATGGCAACAAGTTCGCTTAATCTTCGTGCaataatacc                                                                                                                            >  2:1236850/1‑137 (MQ=255)

            cAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTAcc                                                                                                                           >  1:655262/1‑140 (MQ=255)

               ccGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGa                                                                                                                        <  2:660309/140‑1 (MQ=255)

                cGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGa                                                                                                                        >  2:623733/1‑139 (MQ=255)

                cGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGa                                                                                                                        <  1:623733/139‑1 (MQ=255)

                cGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGAc                                                                                                                       >  1:430879/1‑140 (MQ=255)

                cGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGAc                                                                                                                       >  2:159047/1‑140 (MQ=255)

                         atTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTaaaa                                                                                                              <  2:655262/140‑1 (MQ=255)

                               tACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATcgc                                                                                                        <  2:532497/140‑1 (MQ=255)

                                 cGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCgcgc                                                                                                      >  1:1239177/1‑140 (MQ=255)

                                      aTGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAAt                                                                                                 >  2:819985/1‑140 (MQ=255)

                                      aTGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAAt                                                                                                 >  1:817219/1‑140 (MQ=255)

                                         tAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCACTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGc                                                                                              >  2:1515240/1‑140 (MQ=255)

                                          aaTTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCg                                                                                             <  1:1153049/140‑1 (MQ=255)

                                            ttattTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           <  1:159047/140‑1 (MQ=255)

                                            ttattTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           <  1:1093075/140‑1 (MQ=255)

                                            ttattTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           <  1:105359/140‑1 (MQ=255)

                                            ttattTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTAGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           <  2:1165241/140‑1 (MQ=255)

                                              attTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCg                                                                                             <  1:624383/136‑1 (MQ=255)

                                              attTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCg                                                                                             >  2:624383/1‑136 (MQ=255)

                                              attTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           >  1:348924/1‑138 (MQ=255)

                                              attTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAg                                                                                           <  2:348924/138‑1 (MQ=255)

                                              attTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCt                                                                                         >  2:764852/1‑140 (MQ=255)

                                                ttACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGa                                                                                       >  1:898838/1‑140 (MQ=255)

                                                ttACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGa                                                                                       >  2:1566483/1‑140 (MQ=255)

                                                 tACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGAt                                                                                      <  1:363967/140‑1 (MQ=255)

                                                 tACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGAt                                                                                      >  2:474030/1‑140 (MQ=255)

                                                  aCCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGAtt                                                                                     >  2:1048403/1‑140 (MQ=255)

                                                      cgTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATa                                                                                 >  2:917425/1‑140 (MQ=255)

                                                      cgTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATa                                                                                 >  2:480667/1‑140 (MQ=255)

                                                         cATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACTGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTg                                                                              >  1:1193528/1‑140 (MQ=255)

                                                                  aataatGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATcgct                                                                     >  2:68922/1‑139 (MQ=255)

                                                                  aataatGGCGGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATcgcg                                                                     >  2:1149181/1‑140 (MQ=255)

                                                                     aatGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGttt                                                                  >  2:600803/1‑139 (MQ=255)

                                                                     aatGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGttt                                                                  >  2:952362/1‑139 (MQ=255)

                                                                     aatGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTc                                                                  >  2:1514103/1‑140 (MQ=255)

                                                                     aatGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTc                                                                  >  2:547962/1‑140 (MQ=255)

                                                                          cTGTTGTTAATGATCAATAACGGCTCAATCTCTTTGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCCCGCTCAATGGCGAGCTGATTAATAGTTGCAATTACGTTCTGGTc                                                             >  2:1355939/1‑140 (MQ=255)

                                                                          cTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTc                                                             >  1:658203/1‑140 (MQ=255)

                                                                          cTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTc                                                             <  1:1566483/140‑1 (MQ=255)

                                                                          cTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTc                                                             >  1:1288359/1‑140 (MQ=255)

                                                                           tgttgtTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTcc                                                            <  1:420475/140‑1 (MQ=255)

                                                                           tgttgtTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTcc                                                            <  2:1239177/140‑1 (MQ=255)

                                                                            gttgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCg                                                           <  2:599248/140‑1 (MQ=255)

                                                                            gttgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGAGCTCAATGGCGAGCTGATTAATAGTGGCAATTGGGTTCTGGTACg                                                           >  2:1475519/1‑140 (MQ=255)

                                                                            gttgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTCAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCg                                                           >  1:1238970/1‑140 (MQ=255)

                                                                             ttgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCga                                                          <  2:1404378/140‑1 (MQ=255)

                                                                             ttgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCga                                                          <  1:474030/140‑1 (MQ=255)

                                                                              tgttAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCgag                                                         >  1:55816/1‑140 (MQ=255)

                                                                                     gATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCaaaa                                                  <  2:508783/140‑1 (MQ=255)

                                                                                       tCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATg                                                >  2:1511885/1‑140 (MQ=255)

                                                                                       tCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATg                                                >  1:454183/1‑140 (MQ=255)

                                                                                       tCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATg                                                >  1:378669/1‑140 (MQ=255)

                                                                                        cAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGa                                               >  2:1562037/1‑140 (MQ=255)

                                                                                        cAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGCCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATgt                                               >  2:881202/1‑139 (MQ=255)

                                                                                         aaTAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGAt                                              >  2:1067365/1‑140 (MQ=255)

                                                                                         aaTAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGAt                                              >  1:1077442/1‑140 (MQ=255)

                                                                                          aTAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATc                                             >  1:104354/1‑140 (MQ=255)

                                                                                          aTAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATc                                             >  1:274954/1‑140 (MQ=255)

                                                                                              cGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCt                                         >  2:176324/1‑140 (MQ=255)

                                                                                                gCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTgt                                       >  2:770283/1‑139 (MQ=255)

                                                                                                gCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTgg                                       >  2:60708/1‑140 (MQ=255)

                                                                                                gCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTgg                                       >  2:766584/1‑140 (MQ=255)

                                                                                                gCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGAAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTgt                                       >  2:119888/1‑139 (MQ=255)

                                                                                                 cTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGc                                      >  1:154803/1‑140 (MQ=255)

                                                                                                 cTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGc                                      >  1:628897/1‑140 (MQ=255)

                                                                                                 cTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGc                                      >  2:416423/1‑140 (MQ=255)

                                                                                                 cTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGc                                      >  1:753494/1‑140 (MQ=255)

                                                                                                  tCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGcg                                     <  1:1048403/140‑1 (MQ=255)

                                                                                                   cAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGcgt                                    >  1:486109/1‑140 (MQ=255)

                                                                                                         ctTCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGttt                              >  1:332844/1‑140 (MQ=255)

                                                                                                          ttCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGtttt                             >  1:53561/1‑140 (MQ=255)

                                                                                                           tCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTg                            >  2:349509/1‑140 (MQ=255)

                                                                                                           tCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTg                            >  2:1481573/1‑140 (MQ=255)

                                                                                                           tCGCGAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTg                            >  1:886146/1‑140 (MQ=255)

                                                                                                               gAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGGTGGCGTTCGTTTTGATGc                        <  1:1236850/140‑1 (MQ=255)

                                                                                                               gAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGc                        <  2:628897/140‑1 (MQ=255)

                                                                                                               gAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGc                        <  2:899633/140‑1 (MQ=255)

                                                                                                               gAATGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGc                        <  2:492596/140‑1 (MQ=255)

                                                                                                                aaTGGCAACAAGTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGcc                       >  2:171775/1‑140 (MQ=255)

                                                                                                                           gTTCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGca            <  2:898838/140‑1 (MQ=255)

                                                                                                                            ttCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGcac           <  1:176324/140‑1 (MQ=255)

                                                                                                                            ttCGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGcac           <  2:138694/140‑1 (MQ=255)

                                                                                                                              cGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAg         >  1:874031/1‑140 (MQ=255)

                                                                                                                              cGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAg         >  1:1282759/1‑140 (MQ=255)

                                                                                                                              cGCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAg         >  2:975139/1‑140 (MQ=255)

                                                                                                                               gCTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCC‑‑GAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCa      <  1:547962/140‑1 (MQ=255)

                                                                                                                                cTTAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGc       <  1:819985/140‑1 (MQ=255)

                                                                                                                                 ttAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCa      <  1:1515240/140‑1 (MQ=255)

                                                                                                                                 ttAAGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCa      <  2:486109/140‑1 (MQ=255)

                                                                                                                                 ttAAGCTTCGGGCAATAATTACCCGACAATTCAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCa      <  2:1238970/140‑1 (MQ=255)

                                                                                                                                   aaGCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCaaa    >  2:1188753/1‑140 (MQ=255)

                                                                                                                                     gCTTCGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCAAAAt  <  1:472022/140‑1 (MQ=255)

GTTCGATACCGGCAGCCGTAATGATATTTTTTACGGTGATGTAATTATTTACCGCGTCATCCAGTAAATAATGGCTGTTGTTAATGATCAATAACGGCTCAATCTCTTCGCGAATGGCAACAAGTTCGCTTAAGCTACGGGCAATAATTACCCGACAATTTAAAACATCGCGCTCAATGGCGAGCTGATTAATAGTGGCAATCGCGTTCTGGTCCGAGAGCAAAATGATCGGCTGGCGTTCGTTTTGATGCCGCTCCAGCGCACAGGCAAAAT  >  NC_000913/4088577‑4088849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A