Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,090,345	Δ1 bp	coding (581/1071 nt)	frvX ←	peptidase M42 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,090,343	0	T	.	100.0%	311.8 / NA	72	coding (583/1071 nt)	frvX	peptidase M42 family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (43/29); total (43/29)

TGTTATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAATTTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTC  >  NC_000913/4090205‑4090478

tGTTATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAtt                                                                                                                                        <  1:719325/140‑1 (MQ=255)

  ttATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcg                                                                                                                                      >  1:461513/1‑138 (MQ=255)

  ttATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcg                                                                                                                                      >  1:354908/1‑138 (MQ=255)

  ttATCAATGCCCGGAACATCGCCCGCCACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcg                                                                                                                                      <  1:1073639/140‑3 (MQ=255)

   tATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcgg                                                                                                                                     >  1:790639/1‑137 (MQ=255)

    aTCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcggg                                                                                                                                    <  2:280671/140‑5 (MQ=255)

    aTCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcggg                                                                                                                                    >  1:779248/1‑136 (MQ=255)

    aTCAATGCCCGGAACATCGCCCGCTACAGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAAttcggg                                                                                                                                    <  1:1379894/140‑5 (MQ=255)

     tCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGa                                                                                                                                  >  2:1089823/1‑140 (MQ=255)

          gCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCTAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGattatt                                                                                                                             >  2:1084440/1‑140 (MQ=255)

          gCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGattatt                                                                                                                             >  1:751967/1‑140 (MQ=255)

          gCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGattatt                                                                                                                             >  2:718508/1‑140 (MQ=255)

            ccGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCa                                                                                                                           <  1:1464531/140‑1 (MQ=255)

            ccGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCa                                                                                                                           <  2:779248/140‑1 (MQ=255)

            ccGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCa                                                                                                                           <  1:1116318/140‑1 (MQ=255)

              ggAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCAcc                                                                                                                         <  1:437131/140‑1 (MQ=255)

               gAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGAGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCg                                                                                                                        >  2:419944/1‑140 (MQ=255)

                 aCATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTc                                                                                                                      <  1:718508/140‑1 (MQ=255)

                 aCATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTc                                                                                                                      <  1:441690/140‑1 (MQ=255)

                   aTCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTg                                                                                                                    >  1:626474/1‑140 (MQ=255)

                    tCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGc                                                                                                                   >  2:320074/1‑140 (MQ=255)

                     cGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCa                                                                                                                  >  2:552511/1‑140 (MQ=255)

                     cGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCa                                                                                                                  <  1:855909/140‑1 (MQ=255)

                     cGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCa                                                                                                                  >  2:1335437/1‑140 (MQ=255)

                      gCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCaa                                                                                                                 <  1:1335437/140‑1 (MQ=255)

                                 cggTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCca                                                                                                      >  2:508921/1‑140 (MQ=255)

                                              gATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGcc                                                                                         >  2:1325557/1‑140 (MQ=255)

                                              gATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGcc                                                                                         >  2:331306/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  1:450276/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  2:1377582/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  2:219029/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  1:615997/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  2:1274837/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  1:783724/1‑140 (MQ=255)

                                                tCACGACGTCCGGTTTAATGTGATCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       <  1:1325557/140‑1 (MQ=255)

                                                tCACGACGTCCGGCTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGa                                                                                       >  2:652150/1‑140 (MQ=255)

                                                  acgacgTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATg                                                                                     >  1:969808/1‑140 (MQ=255)

                                                  acgacgTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAACCATCATTGCGCAGCCGATg                                                                                     <  1:552511/140‑1 (MQ=255)

                                                     acgTCCGGTTTAATGAGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCgg                                                                                  <  1:419944/140‑1 (MQ=255)

                                                              ttAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCCCCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAAc                                                                         <  2:238556/140‑1 (MQ=255)

                                                                aaTGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGc                                                                       >  1:1238720/1‑140 (MQ=255)

                                                                      ttCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGcc                                                                 <  1:1377582/140‑1 (MQ=255)

                                                                      ttCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGcc                                                                 >  1:1342590/1‑140 (MQ=255)

                                                                      ttCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGcc                                                                 >  1:234613/1‑140 (MQ=255)

                                                                      ttCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGcc                                                                 >  1:646896/1‑140 (MQ=255)

                                                                       tCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCg                                                                <  2:783724/140‑1 (MQ=255)

                                                                       tCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCg                                                                <  2:646896/140‑1 (MQ=255)

                                                                       tCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCg                                                                >  2:894606/1‑140 (MQ=255)

                                                                       tCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCg                                                                <  1:320074/140‑1 (MQ=255)

                                                                       tCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCg                                                                <  2:626474/140‑1 (MQ=255)

                                                                        ccgccgAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGa                                                               <  2:615997/140‑1 (MQ=255)

                                                                         cgccgAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGAc                                                              <  1:1274837/140‑1 (MQ=255)

                                                                         cgccgAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGAc                                                              <  2:13898/140‑1 (MQ=255)

                                                                             gAGGTTTGCGCCCCGCGTAGCCTAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACt                                                          <  1:1084440/140‑1 (MQ=255)

                                                                              agctttGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACtt                                                         >  2:325867/4‑140 (MQ=255)

                                                                                gTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACtttt                                                       >  2:2295/1‑139 (MQ=255)

                                                                                          cgcgTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGcccc                                             >  2:759468/1‑140 (MQ=255)

                                                                                            cgTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCcac                                           >  2:704116/1‑139 (MQ=255)

                                                                                                gCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAgg                                       <  1:219029/140‑1 (MQ=255)

                                                                                                gCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAgg                                       >  1:1313025/1‑140 (MQ=255)

                                                                                                        tcttcttcCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTg                               <  2:450276/140‑1 (MQ=255)

                                                                                                           tcttcCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCt                            >  2:340782/1‑140 (MQ=255)

                                                                                                             ttcCACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTc                          <  1:652150/140‑1 (MQ=255)

                                                                                                               ccACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCg                        <  1:508921/140‑1 (MQ=255)

                                                                                                               ccACACTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCg                        <  1:759468/140‑1 (MQ=255)

                                                                                                                   acTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCt                    <  2:1313025/140‑1 (MQ=255)

                                                                                                                   acTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCt                    <  1:2295/140‑1 (MQ=255)

                                                                                                                   acTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCt                    >  2:312593/1‑140 (MQ=255)

                                                                                                                    cTGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCta                   >  2:244738/1‑140 (MQ=255)

                                                                                                                     tGCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTTCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCtaa                  >  1:503049/1‑140 (MQ=255)

                                                                                                                      gCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCtaat                 <  1:340782/140‑1 (MQ=255)

                                                                                                                      gCCAACGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCtaat                 >  2:865077/1‑140 (MQ=255)

                                                                                                                           cGCCATACAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAAt            >  2:1239461/1‑140 (MQ=255)

                                                                                                                               aaaCAGCGTAA‑TTCGGGATTATTCCACGTTTGCAATAGTTCAGCCAACATTGCGCAGCCGATGCGGTTATCCAACGACTTGCCGACCACTTTATCTTCCCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTAcc        <  2:494146/138‑1 (MQ=255)

                                                                                                                                 aCAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCaa      >  1:1442185/1‑140 (MQ=255)

                                                                                                                                 aCAGCGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCaa      >  1:491068/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  1:154809/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  2:1277393/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  1:221065/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  1:524736/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  2:296325/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTc  >  2:1075281/1‑140 (MQ=255)

                                                                                                                                     cGTAA‑TTCGGGATTATTAACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCTATGCGGTTATCCAACGCTTTGCCGACCACTTTATCTTTGCCCCAGCAGGCAAAATTGGCTTCCAGGCTAATAAAATTACCAATTTc  >  2:947836/1‑140 (MQ=255)

TGTTATCAATGCCCGGAACATCGCCCGCTACGGCGGTATCCAACACGATCACGACGTCCGGTTTAATGTGTTCCGCCGAGGTTTGCGCCCCGCGTAGCCCAACTTCTTCTTCCACACTGCCAACGCCATACAGCGTAATTTCGGGATTATTCACCGTCTGCAATAGTTCAGCCATCATTGCGCAGCCGATGCGGTTATCCAACGCCTTGCCGACCACTTTATCTTCGCCCCAGCAGGCAAAATTGGCTTCCGGGCTAATAAAATTACCAATTTC  >  NC_000913/4090205‑4090478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A