Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F48 I1 R1 79 90.7 3162666 99.0% 3131039 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,157,275 C→A T142T (ACC→ACA)  argH → argininosuccinate lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,157,2750CA98.8% 278.3 / ‑4.5 80T142T (ACC→ACA) argHargininosuccinate lyase
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (39/40);  total (39/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

GCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAGGATGCGCTT  >  NC_000913/4157139‑4157410
                                                                                                                                        |                                                                                                                                       
gCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGca                                                                                                                                      <  1:943952/140‑1 (MQ=255)
 ccAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGcac                                                                                                                                     <  2:97970/140‑1 (MQ=255)
     ttAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACT‑‑‑GTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACaa                                                                                                                              >  2:238106/1‑140 (MQ=255)
          cAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATc                                                                                                                            >  2:673848/1‑140 (MQ=255)
               aGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGAc                                                                                                                       <  1:1118519/140‑1 (MQ=255)
                  tGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGAcgtg                                                                                                                    <  2:1007582/140‑3 (MQ=255)
                    cATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGt                                                                                                                  <  1:1065281/140‑1 (MQ=255)
                    cATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGt                                                                                                                  >  2:787712/1‑140 (MQ=255)
                        ccGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATg                                                                                                              <  2:281288/140‑1 (MQ=255)
                        ccGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATg                                                                                                              <  1:876096/140‑1 (MQ=255)
                         cGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGc                                                                                                             >  1:100059/1‑140 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATg                                                                                                              <  1:93879/137‑1 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATg                                                                                                              >  2:93879/1‑137 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCa                                                                                                           >  1:987143/1‑140 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCa                                                                                                           >  2:851628/1‑140 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCa                                                                                                           >  1:1316985/1‑140 (MQ=255)
                           ggCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCa                                                                                                           >  2:37545/1‑140 (MQ=255)
                             cGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAgg                                                                                                         <  1:38241/140‑1 (MQ=255)
                                  ccGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                                                                                                    <  1:851628/140‑1 (MQ=255)
                                  ccGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                                                                                                    <  2:736792/140‑1 (MQ=255)
                                  ccGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                                                                                                    <  1:1467411/140‑1 (MQ=255)
                                  ccGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTaca                                                                                                    <  2:877229/140‑1 (MQ=255)
                                  ccGTAATGATAAGGTATCGACTGACCTGAAACTGTGGTTCAAAGATACCGTCAGCGAGTTACTGACGGCTAACCGGCAGCTGCAAACGGCGCTGGTGGAACCAGCAAAAAAAAATCAAGCCGCGGTAATGCCAGGTTaca                                                                                                    <  2:1413895/140‑1 (MQ=255)
                                          aTCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTg                                                                                            >  1:941222/1‑140 (MQ=255)
                                            cAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCa                                                                                          >  1:581080/1‑140 (MQ=255)
                                            cAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCa                                                                                          >  2:833001/1‑140 (MQ=255)
                                             aGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCaa                                                                                         >  2:610336/1‑140 (MQ=255)
                                              ggTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAAc                                                                                        <  1:187404/140‑1 (MQ=255)
                                                  gCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACgcgc                                                                                    >  2:1208950/1‑140 (MQ=255)
                                                  gCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACgcgc                                                                                    <  1:148960/140‑1 (MQ=255)
                                                   cGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGcc                                                                                   >  1:1055280/1‑140 (MQ=255)
                                                   cGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGcc                                                                                   >  1:787850/1‑140 (MQ=255)
                                                   cGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGcc                                                                                   >  1:580426/1‑140 (MQ=255)
                                                    gACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGccc                                                                                  >  2:350358/1‑140 (MQ=255)
                                                     aCTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCa                                                                                 >  2:1399350/1‑140 (MQ=255)
                                                     aCTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCa                                                                                 >  1:661459/1‑140 (MQ=255)
                                                         aCCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCg                                                                             >  1:802161/1‑140 (MQ=255)
                                                         aCCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCg                                                                             >  2:656476/1‑140 (MQ=255)
                                                         aCCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCg                                                                             >  2:227048/1‑140 (MQ=255)
                                                         aCCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCg                                                                             >  2:1500001/1‑140 (MQ=255)
                                                             gAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCTCCTGCAACGCGCCCAGCCGGTGa                                                                         <  2:1168045/140‑1 (MQ=255)
                                                             gAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGa                                                                         <  1:673848/140‑1 (MQ=255)
                                                             gAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGa                                                                         >  1:182808/1‑140 (MQ=255)
                                                                   gtggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCa                                                                                 >  1:945056/1‑126 (MQ=255)
                                                                   gtggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCa                                                                                 <  2:945056/126‑1 (MQ=255)
                                                                    tggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTcgc                                                                  >  2:979008/1‑140 (MQ=255)
                                                                    tggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTcgc                                                                  >  1:1068508/1‑140 (MQ=255)
                                                                    tggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTcgc                                                                  >  1:1454327/1‑140 (MQ=255)
                                                                     ggtgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTcgcg                                                                 <  1:610336/140‑1 (MQ=255)
                                                                       tgCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCa                                                               <  1:1500001/140‑1 (MQ=255)
                                                                        gCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCAc                                                              >  1:571941/1‑140 (MQ=255)
                                                                         cAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACt                                                             <  1:80591/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  1:833001/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  2:661459/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  2:581080/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  1:227048/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  1:787712/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  2:182808/140‑1 (MQ=255)
                                                                              aTACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGc                                                        <  2:1068508/140‑1 (MQ=255)
                                                                                 ccGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGGAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTg                                                     >  1:733101/1‑140 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  1:37545/140‑1 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  2:314808/140‑1 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  2:100059/140‑1 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  2:886309/140‑1 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  1:1399350/140‑1 (MQ=255)
                                                                                   gTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  2:1387994/140‑1 (MQ=255)
                                                                                      aGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTa                                                <  1:1425921/140‑1 (MQ=255)
                                                                                        cGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   >  1:455557/1‑135 (MQ=255)
                                                                                        cGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGc                                                   <  2:455557/135‑1 (MQ=255)
                                                                                        cGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTAtt                                              >  2:987288/1‑139 (MQ=255)
                                                                                            ttACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCCGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTga                                          >  1:1293621/1‑140 (MQ=255)
                                                                                            ttACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTga                                          >  1:503422/1‑140 (MQ=255)
                                                                                                       tAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGgcgc                               >  1:1514972/1‑140 (MQ=255)
                                                                                                       tAACCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGgcgc                               >  2:1066349/1‑140 (MQ=255)
                                                                                                         aCCGGCAGCTGCAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGt                             >  1:898741/1‑140 (MQ=255)
                                                                                                                    cAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCg                  >  2:155947/1‑140 (MQ=255)
                                                                                                                    cAATCGGCGCTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCg                  <  1:1066349/140‑1 (MQ=255)
                                                                                                                            gcTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAgg          <  2:503422/140‑1 (MQ=255)
                                                                                                                             cTGGTGGAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAGGa         <  2:1514972/140‑1 (MQ=255)
                                                                                                                                gtggAAACAGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAGGATgc      <  1:656476/140‑1 (MQ=255)
                                                                                                                                    aaaCAGCACAAAACAATCAGGACACGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAGGATGCGCtt  <  2:941222/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GCCAGTTAGGCAAAAAGCTGCATACCGGGCGTAGCCGTAATGATCAGGTAGCGACTGACCTGAAACTGTGGTGCAAAGATACCGTTAGCGAGTTACTGACGGCTAACCGGCAGCTGCAATCGGCGCTGGTGGAAACCGCACAAAACAATCAGGACGCGGTAATGCCAGGTTACACTCACCTGCAACGCGCCCAGCCGGTGACGTTCGCGCACTGGTGCCTGGCCTATGTTGAGATGCTGGCGCGTGATGAAAGCCGTTTGCAGGATGCGCTT  >  NC_000913/4157139‑4157410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A