Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A11 F48 I1 R1
|
62 |
93.4 |
3176452 |
99.2% |
3151040 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
3,036,812 |
G→T |
A432E (GCG→GAG) |
recJ ← |
ssDNA‑specific exonuclease RecJ |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 3,036,812 | 0 | G | T | 100.0%
| 179.7
/ NA
| 52 | A432E (GCG→GAG) | recJ | ssDNA‑specific exonuclease RecJ |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (38/14); total (38/14) |
CATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCGCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCAAACGC > NC_000913/3036676‑3036948
|
cATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCgcctcct > 2:1238560/1‑139 (MQ=255)
aTTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCAt > 1:450152/1‑140 (MQ=255)
ttAGCGGCCCGTCAGATCCATCTCCGCTTAGAAATGGCAAGGGGTCCAGCCACTCAGTACCCAG‑TTCGCAAAA‑CCGTTGTTAAAAGGTTTTGAATTTACCCTCTCCCAGCGCCAAACCCGCCTCCATCGCATGACCGCCa < 2:450152/140‑1 (MQ=255)
ccGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCac > 1:124654/1‑139 (MQ=255)
ccGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAg > 1:1232262/1‑140 (MQ=255)
cGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGc > 2:541906/1‑140 (MQ=255)
cTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGcatc > 1:472186/1‑140 (MQ=255)
gATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGcatcat > 1:297123/1‑140 (MQ=255)
cTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAggg > 1:1210163/1‑140 (MQ=255)
cTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAggg > 1:803777/1‑140 (MQ=255)
attccatttGAAAAAGCGAGGGCCCCAGCCCGTCAGCAACCAT‑TCCGCCAAA‑CCTTTGTTAAAAGGGTTTGATTTTATCCCCTTCCGGCGAAAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAggg < 2:278529/133‑1 (MQ=255)
ttCGCCTTTCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAggga > 2:784501/1‑139 (MQ=255)
ttCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGt > 1:1238662/1‑140 (MQ=255)
ttCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGt > 2:701733/1‑140 (MQ=255)
tCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTa > 2:1159500/1‑140 (MQ=255)
cGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTag > 1:320592/1‑140 (MQ=255)
cctttacAATAGGGAAGGTCCCAGCCACTCAGTACCCAG‑TCCCCCAAC‑CCGTTGTTGAAAGAGTTTGAATTTACCCCCTCCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTaga < 2:803777/134‑1 (MQ=255)
ggAAGGGTCCCACCCCTTAAGAACCAGATCCGCAAAA‑CCGTTTTGGAAAGGGTTTGAATTTACCCTCTTCCAGGGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAAt < 2:1148756/139‑1 (MQ=255)
aaGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAATCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGc > 1:1482197/1‑140 (MQ=255)
aaGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGc > 1:1178492/1‑140 (MQ=255)
gggCCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGATAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTc > 1:1017805/1‑140 (MQ=255)
tCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAg > 2:1485951/1‑140 (MQ=255)
cAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAgcc > 2:1192500/1‑139 (MQ=255)
ccccTCAGTACCCAG‑TCCGCAAAC‑CCGTTTTTAAAAGAGTTTAATTTTATCCTCTTCCAGCAAAAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCAt < 2:320592/137‑1 (MQ=255)
ccACACAGTACCCAG‑TTCCCAAAA‑CCGTTTTGGAAAGATTTTAATTTTACCCTCTCCCAGCAACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCAt < 2:360547/140‑1 (MQ=255)
cTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCAc > 1:1017820/1‑140 (MQ=255)
cTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCAc > 1:1486341/1‑140 (MQ=255)
cTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCAc > 1:1309033/1‑140 (MQ=255)
cTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCAc > 1:425705/1‑140 (MQ=255)
tCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACg > 2:1348193/1‑140 (MQ=255)
aaaCCAG‑TTCCCAAAA‑CCGTTGTTAAAAGAGTTTGATTTTATCCTCTTCCAGCGACAACCCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCata < 2:472186/139‑1 (MQ=255)
aCCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATg > 1:1148559/1‑140 (MQ=255)
ccAG‑TTCGCAAAC‑CCGTTGTTGAAAGATTTTAAATTTATCCTCTCCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGc < 2:1017820/140‑1 (MQ=255)
cccattCCCCAAACCCGTTTTGGAAAGAGTTAGAATTACACCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACACATATg < 2:1178492/136‑1 (MQ=255)
g‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGc > 1:1454840/1‑140 (MQ=255)
g‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGc > 2:764903/1‑140 (MQ=255)
g‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGc > 1:331388/1‑140 (MQ=255)
ttCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGcc > 1:678910/1‑140 (MQ=255)
tCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGccc > 2:191611/1‑140 (MQ=255)
gCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCt > 1:223004/1‑140 (MQ=255)
acccGTTGTTAAAAGAGTTGAAATTTATCCTCTCCCAGGGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAAt < 2:104385/138‑1 (MQ=255)
ttgAAAGAGTTTAAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGAc < 1:191611/140‑1 (MQ=255)
gAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCg > 2:253164/1‑140 (MQ=255)
agttgaaaTTTACCCTCTCCCAGCGAAAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAAcc < 2:297123/134‑1 (MQ=255)
ttGAATTTATCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCttt > 1:471144/1‑140 (MQ=255)
ttGAATTAACCCTCTCCCAGCAACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCttt < 2:1309033/140‑1 (MQ=255)
aattttATCCTCTTCCAGCGAAAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCa < 2:1238662/137‑1 (MQ=255)
aTTTATCCTCTTCCAGCGACAACCCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGc < 1:541906/140‑1 (MQ=255)
aTCCTCTTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTAc > 1:811145/1‑140 (MQ=255)
ctTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTcc > 2:1194606/1‑139 (MQ=255)
ctTCCAGCGACAAACCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCa > 2:657772/1‑140 (MQ=255)
aaaCCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGgcgc > 1:863186/1‑140 (MQ=255)
aaCCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCa < 1:1485951/140‑1 (MQ=255)
aCCCGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCaa > 1:1554656/1‑140 (MQ=255)
cccGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCaaa < 2:678910/140‑1 (MQ=255)
cccGCCTCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCaaa > 2:770106/1‑140 (MQ=255)
gcctccATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCAAAcgc < 1:1194606/140‑1 (MQ=255)
gcctccATCGCAAGACCGACAAACTTCAGCATCAAGCCAGGGTAGAGTGTGTATAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCAAAcgc < 2:223004/140‑1 (MQ=255)
|
CATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCAG‑TTCGCCAAA‑CCGTTGTTGAAAGAGTTTGAATTTATCCTCTTCCAGCGACAAACCCGCCGCCATCGCATGACCGCCAAACTTCAGCATCATGCCAGGGTAGAGTGTGTCTAATCGCTCCAGCGCATCACGCATATGCAGCCCCTGAATGGAGCGACCGGAACCTTTCAGCGTACCGTCACCTGCTGGCGCAAACGC > NC_000913/3036676‑3036948
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A