Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F48 I1 R1 62 93.4 3176452 99.2% 3151040 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,395,380 C→A P293P (CCG→CCT)  yhdP ← AsmA2 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,395,3800CA100.0% 291.4 / NA 81P293P (CCG→CCT) yhdPAsmA2 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (50/31);  total (50/31)

GAGTTCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCCGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCGATCG  >  NC_000913/3395248‑3395510
                                                                                                                                    |                                                                                                                                  
gAGTTCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGAtttt                                                                                                                             <  2:477230/140‑1 (MQ=255)
gAGTTCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGAtttt                                                                                                                             <  2:437256/140‑1 (MQ=255)
    tCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCGGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCAcg                                                                                                                         <  1:1078367/140‑1 (MQ=255)
    tCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCAcg                                                                                                                         <  2:985522/140‑1 (MQ=255)
    tCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCAcg                                                                                                                         <  2:1523715/140‑1 (MQ=255)
     cGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCAcgc                                                                                                                        >  1:392349/1‑140 (MQ=255)
          cTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAat                                                                                                                   >  1:956215/1‑140 (MQ=255)
             cGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATg                                                                                                                >  2:580052/1‑140 (MQ=255)
               tttATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATgcg                                                                                                              >  2:837789/1‑140 (MQ=255)
                 tATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGcgcg                                                                                                            <  2:554420/140‑1 (MQ=255)
                          tGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTa                                                                                                   >  2:30151/1‑140 (MQ=255)
                          tGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTa                                                                                                   >  1:1442286/1‑140 (MQ=255)
                                cAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCAcc                                                                                             >  1:1034768/1‑140 (MQ=255)
                                  aCGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGa                                                                                           >  1:64542/1‑140 (MQ=255)
                                    gTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACa                                                                                         <  1:294915/140‑1 (MQ=255)
                                        tGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGt                                                                                     >  1:1479594/1‑140 (MQ=255)
                                        tGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGt                                                                                     <  1:699317/140‑1 (MQ=255)
                                          ttCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTAt                                                                                   >  2:1463355/1‑140 (MQ=255)
                                                    aaGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCtt                                                                         <  2:392499/139‑1 (MQ=255)
                                                      ggCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTtct                                                                       >  2:1444445/1‑140 (MQ=255)
                                                       gCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTtctc                                                                      <  2:1442286/140‑1 (MQ=255)
                                                            cGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATATAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCa                                                                 >  1:1286598/1‑140 (MQ=255)
                                                            cGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCa                                                                 >  2:831368/1‑140 (MQ=255)
                                                            cGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCa                                                                 >  1:490778/1‑140 (MQ=255)
                                                            cGTCAATGCTCCGCTCGGCCAGGGTTTG‑‑‑‑CCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCa                                                             >  1:1263053/1‑140 (MQ=255)
                                                                  agCTCCGCACGGCCAGGGTTTGCCGTCCATCGTGATCCGTTTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGc                                                           <  2:669200/139‑1 (MQ=255)
                                                                       cGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCa                                                      >  2:1265671/1‑140 (MQ=255)
                                                                       cGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCa                                                      <  1:1444445/140‑1 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  1:509246/1‑140 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  2:870264/1‑140 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  1:1303602/1‑140 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  1:957679/1‑140 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  1:166759/1‑140 (MQ=255)
                                                                         cTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCAcc                                                    >  1:1085915/1‑140 (MQ=255)
                                                                          tCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCg                                                   >  2:381143/1‑140 (MQ=255)
                                                                            ggCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 <  1:831368/140‑1 (MQ=255)
                                                                            ggCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 <  2:1034768/140‑1 (MQ=255)
                                                                            ggCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 <  2:1569088/140‑1 (MQ=255)
                                                                            ggCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 <  1:30151/140‑1 (MQ=255)
                                                                              ccAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 <  1:278048/138‑1 (MQ=255)
                                                                              ccAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGcc                                                 >  2:278048/1‑138 (MQ=255)
                                                                              ccAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCt                                               >  1:748003/1‑140 (MQ=255)
                                                                                     ttGCCGTCCATCGTGATCCGTATATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAg                                        <  1:381143/140‑1 (MQ=255)
                                                                                       gCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGcc                                      >  2:633409/1‑140 (MQ=255)
                                                                                           tCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGAc                                  >  2:1109034/1‑140 (MQ=255)
                                                                                            ccATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACg                                 >  2:1257761/1‑140 (MQ=255)
                                                                                            ccATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACg                                 >  1:1293970/1‑140 (MQ=255)
                                                                                            ccATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATCTTCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGCCACCGCCCTGTTTCAGCCAGACg                                 >  2:1042275/1‑140 (MQ=255)
                                                                                             cATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGt                                <  1:245459/140‑1 (MQ=255)
                                                                                             cATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGt                                >  1:943732/1‑140 (MQ=255)
                                                                                               tCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCa                              <  1:1442686/140‑1 (MQ=255)
                                                                                                cGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCAc                             >  2:399558/1‑140 (MQ=255)
                                                                                                    aTCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCAccgcc                         >  2:629121/1‑140 (MQ=255)
                                                                                                     tCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCAccgccg                        >  1:143091/1‑140 (MQ=255)
                                                                                                     tCCGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCAccgccg                        >  2:306974/1‑140 (MQ=255)
                                                                                                       cGTGTATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGt                      >  1:618427/1‑140 (MQ=255)
                                                                                                         tgtATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTa                    >  2:1561491/1‑140 (MQ=255)
                                                                                                         tgtATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTa                    >  1:351267/1‑140 (MQ=255)
                                                                                                          gtATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTAc                   >  2:1457433/1‑140 (MQ=255)
                                                                                                          gtATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTAc                   <  2:1303602/140‑1 (MQ=255)
                                                                                                           tATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACa                  >  1:1562360/1‑140 (MQ=255)
                                                                                                           tATCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACa                  <  1:1585467/140‑1 (MQ=255)
                                                                                                            aTCGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACAt                 <  2:957679/140‑1 (MQ=255)
                                                                                                              ggggAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCg               <  2:491897/139‑1 (MQ=255)
                                                                                                              cGGGAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCg               <  2:956215/140‑1 (MQ=255)
                                                                                                                ggAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGcc             >  2:1473873/1‑140 (MQ=255)
                                                                                                                ggAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGcc             >  2:1400140/1‑140 (MQ=255)
                                                                                                                ggAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGcc             >  1:524147/1‑140 (MQ=255)
                                                                                                                 gAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCt            <  2:748003/140‑1 (MQ=255)
                                                                                                                 gAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCt            >  2:1357502/1‑140 (MQ=255)
                                                                                                                 gAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCt            <  1:399558/140‑1 (MQ=255)
                                                                                                                 gAATAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCt            <  1:434474/140‑1 (MQ=255)
                                                                                                                   aTAGAGAACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCttt          >  1:7454/1‑140 (MQ=255)
                                                                                                                      gagaACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTc       <  1:633409/140‑1 (MQ=255)
                                                                                                                      gagaACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTc       <  1:1265671/140‑1 (MQ=255)
                                                                                                                       agaACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCg      >  2:666334/1‑140 (MQ=255)
                                                                                                                       agaACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCg      >  2:943663/1‑140 (MQ=255)
                                                                                                                       agaACTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCg      >  2:1263770/1‑140 (MQ=255)
                                                                                                                          aCTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCGATc   <  2:143091/140‑1 (MQ=255)
                                                                                                                           cTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCGATCg  >  1:1166006/1‑140 (MQ=255)
                                                                                                                           cTGCCAGCCAGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCGATCg  >  1:1169075/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                  
GAGTTCGTCACTGCGTTTATTGTCTTTGCCGCCAACGTCCTGTTCCGGTATCCAGGCCAGCGTCAATGCTCCGCTCGGCCAGGGTTTGCCGTCCATCGTGATCCGTGTATCGGGAATAGAGAACTGCCAGCCCGGATTTTCACGCGTAATATGCGCGGTCAGATTATCCACCGACAGCGTATGCGTTTGCTTCTCGCCCAACCAGCTGGCACCGCCCTGTTTCAGCCAGACGTCACCGCCGGTTACATCGCCTTTGTCGATCG  >  NC_000913/3395248‑3395510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A