Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F48 I1 R1 62 93.4 3176452 99.2% 3151040 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,413,619 G→T G198W (GGG→TGG)  yjfC → putative acid‑‑amine ligase YjfC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,413,6190GT100.0% 287.4 / NA 80G198W (GGG→TGG) yjfCputative acid‑‑amine ligase YjfC
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (34/46);  total (34/46)

TGCTATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTGA  >  NC_000913/4413486‑4413746
                                                                                                                                     |                                                                                                                               
tGCTATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGgcatggcagg                                                                                                                           >  1:1257328/1‑140 (MQ=255)
tGCTATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGgcatggcagg                                                                                                                           >  1:979329/1‑140 (MQ=255)
tGCTATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGgcatggcagg                                                                                                                           >  1:989754/1‑140 (MQ=255)
   tATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGt                                                                                                                        <  1:742173/140‑1 (MQ=255)
    aTTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTc                                                                                                                       <  2:625631/140‑1 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAggcatggcag                                                                                                                            >  2:914226/1‑134 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAggcatggcag                                                                                                                            <  1:914226/134‑1 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:448895/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  2:348570/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:531242/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:626370/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      <  1:232311/140‑1 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:1281231/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:183427/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:1518901/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:90577/1‑140 (MQ=255)
     ttCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGCTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcg                                                                                                                      >  1:1545924/1‑140 (MQ=255)
      tCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcgc                                                                                                                     <  2:1183220/140‑1 (MQ=255)
      tCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcgc                                                                                                                     <  1:906924/140‑1 (MQ=255)
      tCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcgc                                                                                                                     <  1:141767/140‑1 (MQ=255)
      tCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTcgc                                                                                                                     <  2:1257328/140‑1 (MQ=255)
            aCGCCTGATTTCACGCTTTAGCGAGCTATACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTa                                                                                                               >  1:1289294/1‑140 (MQ=255)
             cGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTAt                                                                                                              <  1:1499859/140‑1 (MQ=255)
             cGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTAt                                                                                                              <  1:1445221/140‑1 (MQ=255)
             cGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTAt                                                                                                              <  1:348570/140‑1 (MQ=255)
              gCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATc                                                                                                             <  2:999171/140‑1 (MQ=255)
              gCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGAAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATc                                                                                                             <  2:625394/140‑1 (MQ=255)
               ccTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCt                                                                                                            <  2:928477/140‑1 (MQ=255)
               ccTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCt                                                                                                            >  1:594987/1‑140 (MQ=255)
               ccTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCt                                                                                                            >  1:766396/1‑140 (MQ=255)
                     ttCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTg                                                                                                      <  1:576857/140‑1 (MQ=255)
                      tCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGTGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGa                                                                                                     <  1:227087/140‑1 (MQ=255)
                              tAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCg                                                                                             >  1:339995/1‑140 (MQ=255)
                                      tttACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGc                                                                                     >  1:978266/1‑140 (MQ=255)
                                        tACAGTAGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGt                                                                                   >  1:1303615/1‑140 (MQ=255)
                                          aaGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTcg                                                                                 <  2:978266/139‑1 (MQ=255)
                                             tCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTcggcg                                                                              <  2:1557375/140‑1 (MQ=255)
                                             tCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTcggcg                                                                              <  2:90577/140‑1 (MQ=255)
                                             tCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTcggcg                                                                              <  2:339995/140‑1 (MQ=255)
                                                  aaCCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATTTACATTTAAGATCTCGGTTTGGGCGTCGGCGGCGtt                                                                         >  2:1356456/1‑139 (MQ=255)
                                                  aaCCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTa                                                                         <  2:594987/140‑1 (MQ=255)
                                                  aaCCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTa                                                                         >  1:159267/1‑140 (MQ=255)
                                                  aaCCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTa                                                                         <  2:448895/140‑1 (MQ=255)
                                                    acGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACt                                                                       <  2:1303615/139‑1 (MQ=255)
                                                     cGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTg                                                                      <  2:565881/140‑1 (MQ=255)
                                                         ttATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCg                                                                  <  2:158304/140‑1 (MQ=255)
                                                         ttATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCg                                                                  <  2:1289294/140‑1 (MQ=255)
                                                           aTTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGAt                                                                >  1:1183445/1‑140 (MQ=255)
                                                            tttttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATc                                                               <  2:979329/140‑1 (MQ=255)
                                                             ttttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCt                                                              <  2:588360/140‑1 (MQ=255)
                                                             ttttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCt                                                              <  2:940279/140‑1 (MQ=255)
                                                              tttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCtt                                                             <  2:1281231/140‑1 (MQ=255)
                                                              tttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCtt                                                             <  2:626370/140‑1 (MQ=255)
                                                              tttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCtt                                                             <  2:183427/140‑1 (MQ=255)
                                                               ttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTtg                                                            >  1:684924/1‑140 (MQ=255)
                                                               ttGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTtg                                                            <  2:766915/140‑1 (MQ=255)
                                                                  ctgctgTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTtgatg                                                         >  1:549531/1‑140 (MQ=255)
                                                                   tgctgTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTtgatga                                                        <  2:125357/140‑1 (MQ=255)
                                                                   tgctgTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTtgatga                                                        <  2:159267/140‑1 (MQ=255)
                                                                     ctgTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGGAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGTGTCGGCGGCGTACTGACCGATCTTGATGATa                                                      <  1:1377526/140‑1 (MQ=255)
                                                                      tgTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATaa                                                     >  1:1021814/1‑140 (MQ=255)
                                                                               acCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCa                                            >  1:287261/1‑140 (MQ=255)
                                                                                 cGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGc                                          >  2:188152/1‑140 (MQ=255)
                                                                                  gATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACTTTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCg                                         <  2:1324012/140‑1 (MQ=255)
                                                                                    tGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCCTCCAGCGTg                                       <  2:1021814/140‑1 (MQ=255)
                                                                                        gACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATATTGATGATAATGTCATCCAGCGTGCAtt                                   >  1:1446143/1‑140 (MQ=255)
                                                                                            ggAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTaat                               >  2:92483/1‑139 (MQ=255)
                                                                                            ggAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAg                               <  2:989754/140‑1 (MQ=255)
                                                                                                  ccGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTAt                         >  1:1315909/1‑140 (MQ=255)
                                                                                                     tGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCg                      >  1:364765/1‑140 (MQ=255)
                                                                                                     tGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCg                      <  2:1518901/140‑1 (MQ=255)
                                                                                                     tGCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCg                      <  1:1356456/140‑1 (MQ=255)
                                                                                                      gCTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGc                     <  2:531242/140‑1 (MQ=255)
                                                                                                       cTGTACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCt                    >  2:483608/1‑140 (MQ=255)
                                                                                                          tACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGa                 <  2:287261/140‑1 (MQ=255)
                                                                                                          tACTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGa                 <  2:1316704/140‑1 (MQ=255)
                                                                                                           aCTTGCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAg                <  2:794388/140‑1 (MQ=255)
                                                                                                               gCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGga            >  1:939751/1‑140 (MQ=255)
                                                                                                               gCAGGACTGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGga            >  1:693500/1‑140 (MQ=255)
                                                                                                                      tGCGCCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCg     >  1:129000/1‑140 (MQ=255)
                                                                                                                       gcgcCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGt    <  2:766396/140‑1 (MQ=255)
                                                                                                                        cgcCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTg   <  2:549531/140‑1 (MQ=255)
                                                                                                                        cgcCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTg   >  1:298520/1‑140 (MQ=255)
                                                                                                                        cgcCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTg   >  1:168076/1‑140 (MQ=255)
                                                                                                                         gcCCAGCAGGCATGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTGa  >  1:1037044/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                               
TGCTATTCAGGAACGCCTGATTTCACGCTTTAGCGAGCTTTACAGTCGGGAACCGTTTTATTTTTGCTGCTGTCAGGACACCGATGAAGACAGGAGTACCGTGCTGTACTTGCAGGACTGCGCCCAGCAGGCAGGGCAGGAGTCGCGGTTTATCTACATTGAAGATCTCGGTTTGGGCGTCGGCGGCGTACTGACCGATCTTGATGATAATGTCATCCAGCGTGCATTTAAGCTGTATCCGCTGGAGTGGATGATGCGTGA  >  NC_000913/4413486‑4413746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A