Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F48 I1 R1 70 151.6 5072932 98.7% 5006983 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,097,705 C→A R147S (CGC→AGC)  yggW → putative coproporphyrinogen‑III oxidase‑like protein YggW

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,097,7050CA100.0% 458.1 / NA 129R147S (CGC→AGC) yggWputative coproporphyrinogen‑III oxidase‑like protein YggW
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (69/60);  total (69/60)

Only 100 of 135 total aligned reads displayed.

GCACGGTAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAACGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCTTTC  >  NC_000913/3097574‑3097841
                                                                                                                                   |                                                                                                                                        
gCACGGTAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCgcggcg                                                                                                                                  >  1:1334946/1‑140 (MQ=255)
     gTAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACATGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCt                                                                                                                             >  1:720662/1‑140 (MQ=255)
      tAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTg                                                                                                                            >  2:1237986/1‑140 (MQ=255)
      tAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTg                                                                                                                            >  2:1313375/1‑140 (MQ=255)
      tAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTg                                                                                                                            >  2:1402154/1‑140 (MQ=255)
        gAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGc                                                                                                                          <  1:2379024/140‑1 (MQ=255)
         aaGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCg                                                                                                                         >  1:258635/1‑140 (MQ=255)
          aGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGa                                                                                                                        <  1:615600/140‑1 (MQ=255)
          aGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGa                                                                                                                        >  2:1973019/1‑140 (MQ=255)
           gcagagcGCTTTGTCGATTATCAGCGTGCTGATGTGAGCCGCATCTCTATTAGTGTGCAGAGTTTTAGAGAAGAAAAGCTGAAACGCCTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:1401865/134‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGTGCGGCGAAGCTGGCGAg                                                                                                                       <  2:258635/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:441567/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:1199879/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  2:2034682/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  2:489605/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:1194693/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:968840/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  1:2277606/140‑1 (MQ=255)
           gCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAg                                                                                                                       <  2:1527211/140‑1 (MQ=255)
              gATCGCTTTGTCGAATATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCgg                                                                                                                    >  1:446413/1‑140 (MQ=255)
               aTCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGt                                                                                                                   >  2:146104/1‑140 (MQ=255)
               aTCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGt                                                                                                                   <  1:656091/140‑1 (MQ=255)
                tCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGtt                                                                                                                  >  2:1465940/1‑140 (MQ=255)
                tCGCTTTGTCGATTATCAGCGTGCCGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGtt                                                                                                                  >  2:1581516/1‑140 (MQ=255)
                   cTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAg                                                                                                               <  2:1769002/140‑1 (MQ=255)
                          gATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACg                                                                                                        <  1:628688/140‑1 (MQ=255)
                                cAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCtt                                                                                                  <  1:986616/140‑1 (MQ=255)
                                 aGCGTGCCGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCttt                                                                                                 <  1:1581516/140‑1 (MQ=255)
                                  gCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCtttt                                                                                                >  2:1074942/1‑139 (MQ=255)
                                  gCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTa                                                                                                >  2:1494504/1‑140 (MQ=255)
                                  gCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTa                                                                                                >  2:1123039/1‑140 (MQ=255)
                                  gCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTa                                                                                                >  2:2236146/1‑140 (MQ=255)
                                     tGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAAcc                                                                                             >  1:1893976/1‑140 (MQ=255)
                                      gCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAAcc                                                                                             <  1:805702/139‑1 (MQ=255)
                                      gCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAAcc                                                                                             >  2:805702/1‑139 (MQ=255)
                                      gCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCt                                                                                            <  1:2314579/140‑1 (MQ=255)
                                      gCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCt                                                                                            <  1:2405009/140‑1 (MQ=255)
                                            gtgAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCttgattt                                                                                      <  2:446413/140‑1 (MQ=255)
                                               aaCCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCttgatttgat                                                                                   >  1:1597195/1‑140 (MQ=255)
                                                  cGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGGTGCa                                                                                >  2:1182323/1‑140 (MQ=255)
                                                    cATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATg                                                                              >  1:1128786/1‑140 (MQ=255)
                                                    cATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATg                                                                              >  2:334450/1‑140 (MQ=255)
                                                    cATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATg                                                                              >  2:517965/1‑140 (MQ=255)
                                                     aTCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATgg                                                                             <  2:409990/140‑1 (MQ=255)
                                                     aTCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACATGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATgg                                                                             <  2:720662/140‑1 (MQ=255)
                                                      tctcTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATggg                                                                            <  1:821006/140‑1 (MQ=255)
                                                         ctATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTg                                                                         <  2:1386728/140‑1 (MQ=255)
                                                         ctATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTg                                                                         <  2:1128786/140‑1 (MQ=255)
                                                              ggTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGa                                                                    >  1:1753168/1‑140 (MQ=255)
                                                               gtgtGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGat                                                                   >  2:212039/1‑140 (MQ=255)
                                                               gtgtGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGat                                                                   <  1:146104/140‑1 (MQ=255)
                                                               gtgtGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGat                                                                   <  1:1123039/140‑1 (MQ=255)
                                                               gtgtGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGat                                                                   <  1:1973019/140‑1 (MQ=255)
                                                                 gtgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatca                                                                 >  1:680967/1‑140 (MQ=255)
                                                                 gtgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatca                                                                 >  2:936903/1‑140 (MQ=255)
                                                                 gtgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatca                                                                 >  1:2284037/1‑140 (MQ=255)
                                                                  tgCAGAGTTTTAGCGAAGAAAAGNTGAAACGACTTGGGCGTATTCATGGCCCNNAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaa                                                                >  1:37749/1‑140 (MQ=255)
                                                                  tgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaa                                                                >  1:1735655/1‑140 (MQ=255)
                                                                  tgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaa                                                                >  1:1674233/1‑140 (MQ=255)
                                                                  tgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaa                                                                >  1:127831/1‑140 (MQ=255)
                                                                  tgCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaa                                                                >  2:1356195/1‑140 (MQ=255)
                                                                    cAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaatc                                                              >  2:2234291/1‑140 (MQ=255)
                                                                    cAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaatc                                                              <  1:2458904/140‑1 (MQ=255)
                                                                    cAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaatc                                                              <  1:334450/140‑1 (MQ=255)
                                                                    cAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGatcaatc                                                              >  1:246177/1‑140 (MQ=255)
                                                                       agTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACt                                                           <  1:1979425/140‑1 (MQ=255)
                                                                              gCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAagag                                                    >  2:1702760/1‑140 (MQ=255)
                                                                                 aagaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGgct                                                 >  2:2086694/1‑139 (MQ=255)
                                                                                 aagaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGgcg                                                 >  1:886407/1‑140 (MQ=255)
                                                                                 aagaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGgcg                                                 >  2:1711990/1‑140 (MQ=255)
                                                                                   gaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCt                                               >  2:132602/1‑140 (MQ=255)
                                                                                   gaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCt                                               >  2:58923/1‑140 (MQ=255)
                                                                                   gaaAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCt                                               >  1:2088334/1‑140 (MQ=255)
                                                                                      aaGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTgg                                            <  1:2434715/140‑1 (MQ=255)
                                                                                              aCGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTAc                                    >  1:563561/1‑140 (MQ=255)
                                                                                               cGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACg                                   <  1:1237986/140‑1 (MQ=255)
                                                                                                  cTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCa                                <  2:1735655/140‑1 (MQ=255)
                                                                                                  cTTGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCa                                >  2:1855108/1‑140 (MQ=255)
                                                                                                    tGGGCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAgg                              <  2:719591/140‑1 (MQ=255)
                                                                                                       gCGTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCa                           <  2:1245649/140‑1 (MQ=255)
                                                                                                         gTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGGTGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCAtt                         <  1:2218943/140‑1 (MQ=255)
                                                                                                         gTATTCATGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCAtt                         <  2:2353283/140‑1 (MQ=255)
                                                                                                                tGGCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGa                  >  2:1576246/1‑140 (MQ=255)
                                                                                                                 ggCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCa                           >  1:1389747/1‑130 (MQ=255)
                                                                                                                 ggCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCa                           <  2:1389747/130‑1 (MQ=255)
                                                                                                                 ggCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGaa                 >  2:549624/1‑140 (MQ=255)
                                                                                                                  gCCCGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAAt                <  1:1402154/140‑1 (MQ=255)
                                                                                                                   cccGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATc               >  1:246984/1‑140 (MQ=255)
                                                                                                                    ccGCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATcc              >  1:1879123/1‑140 (MQ=255)
                                                                                                                      gCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATccgc            <  1:982221/140‑1 (MQ=255)
                                                                                                                      gCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATccgc            <  2:1879123/140‑1 (MQ=255)
                                                                                                                      gCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATccgc            <  1:1149299/140‑1 (MQ=255)
                                                                                                                      gCAAGAAGCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGAGCAATCACTGGAAGAGGCGCTTGGCGATCTTCGCCAGGCCATTGAACTGAATccgc            >  2:1907458/1‑140 (MQ=255)
                                                                                                                         agaagCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCcgccgc         <  2:1674233/140‑1 (MQ=255)
                                                                                                                         agaagCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCcgccgc         <  1:1855108/140‑1 (MQ=255)
                                                                                                                          aaagCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCa        <  2:977838/139‑1 (MQ=255)
                                                                                                                             gCGAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCt     >  2:2504918/1‑140 (MQ=255)
                                                                                                                               gAAAAGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCttt   >  2:1518257/1‑140 (MQ=255)
                                                                                                                                aaaaGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCTTTc  <  1:2086694/140‑1 (MQ=255)
                                                                                                                                aaaaGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCTTTc  <  1:1313375/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                        
GCACGGTAGAAGCCGATCGCTTTGTCGATTATCAGCGTGCTGGTGTGAACCGCATCTCTATTGGTGTGCAGAGTTTTAGCGAAGAAAAGCTGAAACGACTTGGGCGTATTCATGGCCCGCAAGAAGCGAAACGCGCGGCGAAGCTGGCGAGCGGTTTAGGGTTACGTAGCTTTAACCTTGATTTGATGCATGGGCTGCCGGATCAATCACTGGAAGAGGCGCTTGGCGATCTACGCCAGGCCATTGAACTGAATCCGCCGCATCTTTC  >  NC_000913/3097574‑3097841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A