Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,257,661	G→C	A117G (GCG→GGG)	cyuP ←	putative D/L‑serine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,257,661	0	G	C	100.0%	503.0 / NA	131	A117G (GCG→GGG)	cyuP	putative D/L‑serine transporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (64/67); total (64/67)

Only 100 of 132 total aligned reads displayed.

AGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAACCAATCAC  >  NC_000913/3257526‑3257794

aGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCAcc                                                                                                                                   <  1:1591700/140‑1 (MQ=255)

     cAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACa                                                                                                                              >  2:1120388/1‑140 (MQ=255)

       gACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAgg                                                                                                                            >  1:1528653/1‑140 (MQ=255)

        aCCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGa                                                                                                                           <  1:2095635/140‑1 (MQ=255)

        aCCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGa                                                                                                                           <  2:972795/140‑1 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  2:2130419/1‑140 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  2:2356538/1‑140 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  2:1142945/1‑140 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  1:297114/1‑140 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  1:1590538/1‑140 (MQ=255)

            tAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGCATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGcc                                                                                                                       >  1:1295717/1‑140 (MQ=255)

             aaaaGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGccc                                                                                                                      <  2:22426/140‑1 (MQ=255)

             aaaaGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGccc                                                                                                                      <  1:1095263/140‑1 (MQ=255)

                  ggACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtt                                                                                                                 >  2:632679/1‑140 (MQ=255)

                  ggACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtt                                                                                                                 >  1:1484673/1‑140 (MQ=255)

                  ggACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtt                                                                                                                 >  1:724983/1‑140 (MQ=255)

                   gACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGttt                                                                                                                <  1:2204080/140‑1 (MQ=255)

                   gACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGttt                                                                                                                <  2:1617582/140‑1 (MQ=255)

                    aCTGTCTGACAGCAACCCTTCCTTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGGGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtttt                                                                                                               >  2:66658/1‑140 (MQ=255)

                    aCTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtttt                                                                                                               >  2:423638/1‑140 (MQ=255)

                    aCTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGtttt                                                                                                               >  1:243085/1‑140 (MQ=255)

                     cTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGttttt                                                                                                              <  1:1939240/140‑1 (MQ=255)

                     cTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGttttt                                                                                                              <  1:1693329/140‑1 (MQ=255)

                      tGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTa                                                                                                             >  2:19267/1‑140 (MQ=255)

                       gTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTAc                                                                                                            >  2:1507429/1‑140 (MQ=255)

                              aGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATa                                                                                                     <  2:724983/140‑1 (MQ=255)

                              aGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCAAAATa                                                                                                     <  2:1712598/140‑1 (MQ=255)

                                  aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGTTGCCCCAGTTTTTACCTAAATAACCg                                                                                                 >  1:1491162/1‑140 (MQ=255)

                                  aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                                 >  1:1071817/1‑140 (MQ=255)

                                  aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                                 <  2:1424609/140‑1 (MQ=255)

                                  aCCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCg                                                                                                 >  1:1641394/1‑140 (MQ=255)

                                           tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                                        <  1:1783288/140‑1 (MQ=255)

                                           tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                                        <  1:423638/140‑1 (MQ=255)

                                           tCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACg                                                                                        <  2:340066/140‑1 (MQ=255)

                                            cACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGc                                                                                       <  2:626687/140‑1 (MQ=255)

                                            cACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGc                                                                                       <  2:1528653/140‑1 (MQ=255)

                                             aCGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCt                                                                                      <  2:1354842/140‑1 (MQ=255)

                                              cGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTc                                                                                     >  2:1716075/1‑140 (MQ=255)

                                              cGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTc                                                                                     >  2:1518888/1‑140 (MQ=255)

                                               gCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCg                                                                                    >  2:1116029/1‑140 (MQ=255)

                                                ccGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCgg                                                                                   <  2:2166761/140‑1 (MQ=255)

                                                  gAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGt                                                                                 <  2:520296/140‑1 (MQ=255)

                                                  gAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGt                                                                                 <  2:2431443/140‑1 (MQ=255)

                                                  gAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGt                                                                                 <  1:1894682/140‑1 (MQ=255)

                                                  gAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGt                                                                                 <  1:440571/140‑1 (MQ=255)

                                                   aaGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTa                                                                                <  2:1460061/140‑1 (MQ=255)

                                                   aaGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTa                                                                                <  1:410342/140‑1 (MQ=255)

                                                    aGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTaa                                                                               <  2:972296/140‑1 (MQ=255)

                                                    aGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTaa                                                                               <  1:2356538/140‑1 (MQ=255)

                                                       tATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCt                                                                            <  1:1665975/140‑1 (MQ=255)

                                                         tGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCttt                                                                          >  2:579725/1‑140 (MQ=255)

                                                            aGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCCCCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACa                                                                       <  2:243085/140‑1 (MQ=255)

                                                              gtagtaAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACAtt                                                                     >  1:2178875/1‑140 (MQ=255)

                                                               tAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTc                                                                    >  2:483078/1‑140 (MQ=255)

                                                                aGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCt                                                                   >  2:353850/1‑140 (MQ=255)

                                                                aGGAAGCACTATCGTTGGTGATGGCGGCGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCCCGGGTAATCTTTACATTCt                                                                   >  1:2021874/1‑140 (MQ=255)

                                                                 ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTg                                                                  <  2:274166/140‑1 (MQ=255)

                                                                 ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTg                                                                  <  1:66658/140‑1 (MQ=255)

                                                                 ggAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCAATACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTg                                                                  >  1:1673390/1‑140 (MQ=255)

                                                                       aCTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGAtt                                                            >  2:2470634/1‑140 (MQ=255)

                                                                        cTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTc                                                           >  1:709101/1‑140 (MQ=255)

                                                                         tATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGAtttt                                                          >  1:235304/1‑138 (MQ=255)

                                                                         tATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCt                                                          >  2:830693/1‑140 (MQ=255)

                                                                            cGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGcc                                                       >  1:16535/1‑140 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  2:1641394/140‑1 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  2:1673390/140‑1 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  1:2454157/140‑1 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  2:327065/140‑1 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  2:709101/140‑1 (MQ=255)

                                                                                ggTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCg                                                   <  1:936520/140‑1 (MQ=255)

                                                                                      ggCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTCCCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATtaa                                             <  1:1120388/140‑1 (MQ=255)

                                                                                            ggAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACa                                       <  2:1295717/140‑1 (MQ=255)

                                                                                                  gACGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCt                                 <  2:16535/140‑1 (MQ=255)

                                                                                                   aCGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCtt                                >  2:1345998/1‑139 (MQ=255)

                                                                                                    cGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGCCGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               <  1:2130419/140‑1 (MQ=255)

                                                                                                    cGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               <  2:1469157/140‑1 (MQ=255)

                                                                                                    cGAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               <  1:953425/140‑1 (MQ=255)

                                                                                                    agAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               <  2:297114/139‑1 (MQ=255)

                                                                                                     gAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               <  2:2070177/139‑1 (MQ=255)

                                                                                                     gAACATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGa                               >  1:2070177/1‑139 (MQ=255)

                                                                                                       aCATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAAc                            >  1:1881728/1‑140 (MQ=255)

                                                                                                       aCATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAAc                            >  1:2011280/1‑140 (MQ=255)

                                                                                                       aCATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAAc                            <  1:2470634/140‑1 (MQ=255)

                                                                                                       aCATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAAc                            >  1:57999/1‑140 (MQ=255)

                                                                                                       aCATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAAACGCTGAAAc                            <  1:483078/140‑1 (MQ=255)

                                                                                                        cATCCAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACa                           >  1:172049/1‑140 (MQ=255)

                                                                                                           ccAAATCACCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGAt                        <  1:830693/140‑1 (MQ=255)

                                                                                                                  aCCAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGc                 <  2:1071817/140‑1 (MQ=255)

                                                                                                                   ccAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGcc                >  1:706979/1‑140 (MQ=255)

                                                                                                                   ccAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGcc                >  1:2191947/1‑140 (MQ=255)

                                                                                                                    cAGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCg               <  2:975465/140‑1 (MQ=255)

                                                                                                                     aGCATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCgg              >  1:1452738/1‑140 (MQ=255)

                                                                                                                       cATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGt            >  2:1746866/1‑140 (MQ=255)

                                                                                                                       cATTACGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGt            >  1:2094431/1‑140 (MQ=255)

                                                                                                                           aCGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAAcc        <  1:632679/140‑1 (MQ=255)

                                                                                                                           aCGAAATAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAAcc        >  2:860001/1‑140 (MQ=255)

                                                                                                                                aTAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAACCAATCa   <  2:2191947/140‑1 (MQ=255)

                                                                                                                                 tAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAACCAATCAc  >  1:804422/1‑140 (MQ=255)

                                                                                                                                 tAGAGCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAACCAATCAc  >  2:899488/1‑140 (MQ=255)

                                                                                                                                    agCCCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGt            <  1:327237/127‑1 (MQ=255)

AGTACCAGACCATAAAAGGGACTGTCTGACAGCAACCCTTCCGTCACGCCGAAGGTATGCAGGTAGGAAGCACTATCGTTGGTGATGGCGGTGGAATAGACGAACATCCAAATCACCAGCATTACGAAATAGAGCGCACCTAACAGGATGCCCCAGTTTTTACCTAAATAACCGCTAATGACGCTCGGGTAATCTTTACATTCTGGTGATTCTGCCAGCGTATTAATAAACAATCGCTGAAACAGATACATTGCCGGGTAACCAATCAC  >  NC_000913/3257526‑3257794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A