Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F48 I1 R1	70	151.6	5072932	98.7%	5006983	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,032,189	G→A	L343L (CTG→CTA)	pepQ →	Xaa‑Pro dipeptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,032,189	0	G	A	100.0%	581.0 / NA	161	L343L (CTG→CTA)	pepQ	Xaa‑Pro dipeptidase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (77/84); total (77/84)

Only 100 of 165 total aligned reads displayed.

TCCAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTGCAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCGGGTATCTAC  >  NC_000913/4032056‑4032324

tCCAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTg                                                                                                                                   >  2:1028759/1‑140 (MQ=255)

tCCAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTg                                                                                                                                   >  1:988291/1‑140 (MQ=255)

tCCAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTg                                                                                                                                   >  2:1047454/1‑140 (MQ=255)

 ccAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGc                                                                                                                                  >  2:235385/1‑140 (MQ=255)

     ttCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGa                                                                                                                              >  2:2430348/1‑140 (MQ=255)

     ttCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGa                                                                                                                              >  1:1494944/1‑140 (MQ=255)

     ttCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGa                                                                                                                              >  1:1330956/1‑140 (MQ=255)

      tCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGAc                                                                                                                             <  2:1648968/140‑1 (MQ=255)

           cAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGc                                                                                                                        <  2:2157190/140‑1 (MQ=255)

           cAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGc                                                                                                                        <  1:1423794/140‑1 (MQ=255)

           cAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGc                                                                                                                        <  1:855797/140‑1 (MQ=255)

           cAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGc                                                                                                                        <  1:808449/140‑1 (MQ=255)

           aaGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGc                                                                                                                        <  2:17565/139‑1 (MQ=255)

             gcgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGGGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGTCCTACAGGTGCATGACGTCGCTg                                                                                                                      >  1:2306176/1‑140 (MQ=255)

             gcgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTg                                                                                                                      <  2:2459174/140‑1 (MQ=255)

             gcgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTg                                                                                                                      >  1:474172/1‑140 (MQ=255)

             gcgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCACTGGGCCTACAGGTGCATGACGTCGCTg                                                                                                                      >  1:1886201/1‑140 (MQ=255)

              cgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTgg                                                                                                                     >  2:557375/1‑140 (MQ=255)

              cgcATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTgg                                                                                                                     >  1:1883354/1‑140 (MQ=255)

                aaTCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGtt                                                                                                                   <  2:811536/139‑1 (MQ=255)

                     ccAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATg                                                                                                              <  1:1523094/140‑1 (MQ=255)

                     ccAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATg                                                                                                              <  2:2362433/140‑1 (MQ=255)

                     ccAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATg                                                                                                              <  1:760388/140‑1 (MQ=255)

                     ccAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATg                                                                                                              <  1:1503938/140‑1 (MQ=255)

                        aaCTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAg                                                                                                           <  2:731865/140‑1 (MQ=255)

                        aaCTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAg                                                                                                           <  2:1582727/140‑1 (MQ=255)

                           tgctgcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGgat                                                                                                        >  1:2473798/1‑140 (MQ=255)

                             ctgcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGgatga                                                                                                      >  1:2055307/1‑140 (MQ=255)

                             ctgcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGgatga                                                                                                      >  2:1500658/1‑140 (MQ=255)

                             ctgcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGgatga                                                                                                      >  1:1595199/1‑140 (MQ=255)

                               gcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATa                                                                                                    <  2:1595199/140‑1 (MQ=255)

                               gcGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATa                                                                                                    <  1:1373373/140‑1 (MQ=255)

                                       aTCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACg                                                                                            >  2:351163/1‑140 (MQ=255)

                                         cAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCa                                                                                          <  2:1693387/140‑1 (MQ=255)

                                                 caCCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACATGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCgg                                                                                  >  1:528152/1‑140 (MQ=255)

                                                 caCCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCgg                                                                                  >  1:2196219/1‑140 (MQ=255)

                                                 caCCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCgg                                                                                  >  2:1114333/1‑140 (MQ=255)

                                                 caCCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCgg                                                                                  >  1:824198/1‑140 (MQ=255)

                                                   ccGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCa                                                                                >  2:2499460/1‑140 (MQ=255)

                                                        atGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGc                                                                           <  2:2451825/140‑1 (MQ=255)

                                                           aGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACTGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaa                                                                        >  1:2409520/1‑140 (MQ=255)

                                                           aGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaa                                                                        <  2:1450433/140‑1 (MQ=255)

                                                           aGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaa                                                                        <  2:1245817/140‑1 (MQ=255)

                                                           aGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaa                                                                        <  2:474172/140‑1 (MQ=255)

                                                            gTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATTGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaaa                                                                       >  1:1726337/1‑140 (MQ=255)

                                                            gTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCaaaa                                                                       >  1:514543/1‑140 (MQ=255)

                                                             tGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAat                                                                      >  2:2065479/1‑140 (MQ=255)

                                                             tGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAat                                                                      >  2:778118/1‑140 (MQ=255)

                                                                agaagCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATc                                                                   <  1:1465933/140‑1 (MQ=255)

                                                                agaagCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATc                                                                   >  2:436888/1‑140 (MQ=255)

                                                                  aagCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCg                                                                 <  2:462603/140‑1 (MQ=255)

                                                                    gCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTa                                                               >  1:534784/1‑140 (MQ=255)

                                                                     cGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCg                                                                 <  2:557988/137‑1 (MQ=255)

                                                                      gATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCCACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTAcc                                                             >  2:1552835/1‑140 (MQ=255)

                                                                       aTGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCt                                                            >  1:1967737/1‑140 (MQ=255)

                                                                        tGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTg                                                           >  1:1300294/1‑140 (MQ=255)

                                                                          gTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTgcg                                                         <  1:1110533/140‑1 (MQ=255)

                                                                             gAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTg                                                      >  1:184449/1‑140 (MQ=255)

                                                                             gAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTg                                                      <  1:2101329/140‑1 (MQ=255)

                                                                              aaaaCGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGc                                                     >  1:879192/1‑140 (MQ=255)

                                                                              aaaaCGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGc                                                     >  1:2321380/1‑140 (MQ=255)

                                                                                aaCGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCAc                                                   <  1:2465854/140‑1 (MQ=255)

                                                                                aaCGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCAc                                                   <  1:1675769/140‑1 (MQ=255)

                                                                                aaCGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCAc                                                   <  2:1788436/140‑1 (MQ=255)

                                                                                    aTCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGt                                               >  1:1305659/1‑140 (MQ=255)

                                                                                         aCCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATtct                                          >  2:712371/1‑140 (MQ=255)

                                                                                         aCCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATtct                                          >  1:1317354/1‑140 (MQ=255)

                                                                                          ccGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATtctc                                         >  2:1442486/1‑140 (MQ=255)

                                                                                            gggCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCa                                       >  2:1510209/1‑140 (MQ=255)

                                                                                             ggCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAg                                      >  1:371573/1‑140 (MQ=255)

                                                                                                   ttATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGc                                <  1:233206/140‑1 (MQ=255)

                                                                                                   ttATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGc                                <  2:824198/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  2:845878/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  1:1073929/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  2:2046536/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  2:1883354/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  2:1372510/140‑1 (MQ=255)

                                                                                                    tATGCCGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCa                               <  1:797040/140‑1 (MQ=255)

                                                                                                         cGCATGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGgtg                          <  1:690175/140‑1 (MQ=255)

                                                                                                            aTGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTa                       >  2:910195/1‑140 (MQ=255)

                                                                                                            aTGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTa                       >  2:1504784/1‑140 (MQ=255)

                                                                                                             tGGTATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTaa                      >  1:2529021/1‑140 (MQ=255)

                                                                                                                tATCGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCa                   <  2:2321380/140‑1 (MQ=255)

                                                                                                                tATCGGCCATCCGCTGGGCCCACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCa                   <  1:1552835/140‑1 (MQ=255)

                                                                                                                   cGGCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCg                <  2:1967737/140‑1 (MQ=255)

                                                                                                                    ggCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGa               <  1:910195/140‑1 (MQ=255)

                                                                                                                     gCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGaa              >  1:1140167/1‑140 (MQ=255)

                                                                                                                     gCCATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCCGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGaa              <  1:100224/140‑1 (MQ=255)

                                                                                                                      ccATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAAc             <  2:1207562/140‑1 (MQ=255)

                                                                                                                      ccATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAAc             <  1:1010458/140‑1 (MQ=255)

                                                                                                                      ccATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAAc             <  1:557375/140‑1 (MQ=255)

                                                                                                                      ccATCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAAc             <  1:1936672/140‑1 (MQ=255)

                                                                                                                         tCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCgg          <  2:1665429/140‑1 (MQ=255)

                                                                                                                         tCCGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCgg          <  2:797710/140‑1 (MQ=255)

                                                                                                                         accGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCgg          <  2:798179/139‑1 (MQ=255)

                                                                                                                          ccGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCTCCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCggg         >  1:439435/1‑140 (MQ=255)

                                                                                                                          ccGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCggt         >  2:523565/1‑139 (MQ=255)

                                                                                                                          ccGCTGGGCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCggg         >  1:520763/1‑140 (MQ=255)

                                                                                                                                ggCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCGGGTATCTa   <  2:2196219/140‑1 (MQ=255)

                                                                                                                                 gCCTACAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCGGGTATCTAc  <  2:763369/140‑1 (MQ=255)

TCCAGTTCCATCAGCGCATCGCCAAACTGCTGCGTAAACATCAAATCATCACCGATATGAGTGAAGAAGCGATGGTCGAAAACGATCTTACCGGGCCGTTTATGCCGCATGGTATCGGCCATCCGCTGGGCCTGCAGGTGCATGACGTCGCTGGTTTTATGCAGGATGATAGCGGTACGCACCTCGCGGCACCGGCAAAATATCCGTACCTGCGCTGCACCCGTATTCTCCAGCCGGGCATGGTGTTAACCATCGAACCGGGTATCTAC  >  NC_000913/4032056‑4032324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A