Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	161	50.8	1735388	98.6%	1711092	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,055,516	C→T	G221G (GGG→GGA)	torS ←	sensory histidine kinase TorS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,055,516	0	C	T	98.5%	233.3 / ‑5.7	68	G221G (GGG→GGA)	torS	sensory histidine kinase TorS
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (31/36); total (31/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGCCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTGTTCG  >  NC_000913/1055383‑1055648

cGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGtccc                                                                                                                                   >  2:642213/1‑137 (MQ=255)

cGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGtccc                                                                                                                                   <  1:642213/137‑1 (MQ=255)

cGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGa                                                                                                                                >  1:353187/1‑140 (MQ=255)

cGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGa                                                                                                                                <  2:186586/140‑1 (MQ=255)

cGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTACATTTTTCTGGATCTGCTCCAGTCCCAGa                                                                                                                                >  1:203306/1‑140 (MQ=255)

 ggTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGAt                                                                                                                               >  1:767864/1‑140 (MQ=255)

  gTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGAtt                                                                                                                              >  2:760778/1‑140 (MQ=255)

  gTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGAtt                                                                                                                              >  1:437915/1‑140 (MQ=255)

    aGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATtca                                                                                                                            <  1:103585/140‑1 (MQ=255)

          cGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCa                                                                                                                      >  2:846403/1‑140 (MQ=255)

           gttgttGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCAt                                                                                                                     >  2:476852/1‑140 (MQ=255)

           gttgttGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCAt                                                                                                                     >  1:779981/1‑140 (MQ=255)

               ttgCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 >  2:864883/1‑140 (MQ=255)

               ttgCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 >  2:74190/1‑140 (MQ=255)

               ttgCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 <  1:846403/140‑1 (MQ=255)

               ttgCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 <  1:701034/140‑1 (MQ=255)

                    aCCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 <  2:79594/135‑1 (MQ=255)

                    aCCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTtgc                                                                                                                 >  1:79594/1‑135 (MQ=255)

                    aCCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCAc                                                                                                            <  1:738189/140‑1 (MQ=255)

                        gcgcACGAACACCCGGATCTTTAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGc                                                                                                        >  2:613889/1‑140 (MQ=255)

                         cgcACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCa                                                                                                       >  1:109571/1‑140 (MQ=255)

                         cgcACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCa                                                                                                       <  2:767864/140‑1 (MQ=255)

                                acacCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTTCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCt                                                                                                <  2:765923/140‑1 (MQ=255)

                                acacCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCt                                                                                                <  1:74190/140‑1 (MQ=255)

                                   cccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCagag                                                                                                    >  2:470750/1‑133 (MQ=255)

                                   cccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCagag                                                                                                    <  1:470750/133‑1 (MQ=255)

                                   cccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAg                                                                                             >  2:302175/1‑140 (MQ=255)

                                    ccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCa                                                                                                       <  2:722639/129‑1 (MQ=255)

                                    ccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCa                                                                                                       >  1:722639/1‑129 (MQ=255)

                                    ccGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAgg                                                                                            <  2:619800/140‑1 (MQ=255)

                                      ggATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGgcg                                                                                          <  2:583460/140‑1 (MQ=255)

                                      ggATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGgcg                                                                                          <  1:230161/140‑1 (MQ=255)

                                        aTCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCa                                                                                        >  2:684504/1‑140 (MQ=255)

                                        aTCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCa                                                                                        <  1:760778/140‑1 (MQ=255)

                                        aTCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCa                                                                                        <  1:302175/140‑1 (MQ=255)

                                             cAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGttca                                                                                   <  2:779981/140‑1 (MQ=255)

                                                 gCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGttcattca                                                                               <  2:221261/140‑1 (MQ=255)

                                                  cGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTtcattcat                                                                              <  2:682250/140‑1 (MQ=255)

                                                  cGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTtcattcat                                                                              <  1:864883/140‑1 (MQ=255)

                                                    tATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATc                                                                             >  2:343428/1‑139 (MQ=255)

                                                    tATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATc                                                                             <  1:343428/139‑1 (MQ=255)

                                                    tATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCt                                                                            >  1:829057/1‑140 (MQ=255)

                                                       ttGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGt                                                                         <  1:684504/140‑1 (MQ=255)

                                                       ttGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTACATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGt                                                                         <  2:203306/140‑1 (MQ=255)

                                                            gACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACa                                                                    <  2:109571/140‑1 (MQ=255)

                                                                  gCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCa                                                              <  1:476852/140‑1 (MQ=255)

                                                                                gCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATatcaat                                                >  2:464956/1‑140 (MQ=255)

                                                                                           ctgctTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGa                                     >  1:439640/1‑140 (MQ=255)

                                                                                           ctgctTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGa                                     >  1:713230/1‑140 (MQ=255)

                                                                                           ctgctTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGa                                     >  1:527192/1‑140 (MQ=255)

                                                                                              ctTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGCCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTg                                  >  2:455337/1‑140 (MQ=255)

                                                                                                 ttCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCAc                               <  2:829057/140‑1 (MQ=255)

                                                                                                        gTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTcagc                        >  1:686834/1‑140 (MQ=255)

                                                                                                        gTTGGTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTcagc                        >  1:746957/1‑140 (MQ=255)

                                                                                                           ggTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTcag                         <  1:122956/136‑1 (MQ=255)

                                                                                                           ggTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTcag                         >  2:122956/1‑136 (MQ=255)

                                                                                                           ggTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCagcagc                     >  2:861205/1‑140 (MQ=255)

                                                                                                            gTGCATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGcc                    <  2:686834/140‑1 (MQ=255)

                                                                                                               cATTTTTCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGa                 <  2:746957/140‑1 (MQ=255)

                                                                                                                 tttttCTGGATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACg               <  1:464956/140‑1 (MQ=255)

                                                                                                                 tttttCTGGATCTGCTCCAGCCCCAGATTCATCACCATTTGCTGCACCAGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACg               <  2:478366/140‑1 (MQ=255)

                                                                                                                         gATCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCtt       <  2:650328/140‑1 (MQ=255)

                                                                                                                          aTCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTg      <  2:458572/140‑1 (MQ=255)

                                                                                                                           tCTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTGt     <  1:613889/140‑1 (MQ=255)

                                                                                                                            cTGCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTGtt    <  2:527192/140‑1 (MQ=255)

                                                                                                                              gCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGa                 >  2:748892/1‑125 (MQ=255)

                                                                                                                              gCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGa                 <  1:748892/125‑1 (MQ=255)

                                                                                                                              gCTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTGTTCg  >  2:724532/1‑140 (MQ=255)

                                                                                                                               cTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACg               <  2:741932/126‑1 (MQ=255)

                                                                                                                               cTCCAGTCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACg               >  1:741932/1‑126 (MQ=255)

CGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTATTGAGCTGCTTTTCCAGCGTTGGTGCATTTTTCTGGATCTGCTCCAGCCCCAGATTCATCACCATTTGCTGCACCCGCAGAGCGCTAAGGCGCAGTTCATTCATCTGGTTAACATACTCAAGATCGATATCAATCAGCCGATCGAGTGCACTTTCAGCAGCCTGACGCTGATCTTGTTCG  >  NC_000913/1055383‑1055648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A