Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	140	59.4	2004938	99.3%	1990903	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	902,828	A→G	L54P (CTG→CCG)	artI ←	putative ABC transporter periplasmic binding protein ArtI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	902,828	0	A	G	100.0%	210.3 / NA	59	L54P (CTG→CCG)	artI	putative ABC transporter periplasmic binding protein ArtI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/28); total (31/28)

AGCACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACAGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTAAAACCTGCAATT  >  NC_000913/902693‑902962

aGCACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGgcgc                                                                                                                                    <  1:741696/140‑1 (MQ=255)

aGCACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGgcgc                                                                                                                                    >  2:861220/1‑140 (MQ=255)

aGCACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGgcgc                                                                                                                                    >  2:165695/1‑140 (MQ=255)

  cACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCtt                                                                                                                                  >  2:868700/1‑140 (MQ=255)

     cTGCTTTTCACGCTCCGGAGTGATCTCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTtgtg                                                                                                                               <  1:459383/140‑1 (MQ=255)

     cTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTtgtg                                                                                                                               >  2:872905/1‑140 (MQ=255)

            tCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTc                                                                                                                        >  1:898250/1‑140 (MQ=255)

                  tCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTc                                                                                                                  >  2:129391/1‑140 (MQ=255)

                   ccGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCa                                                                                                                 <  1:185888/140‑1 (MQ=255)

                          gATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCaa                                                                                                          <  1:165695/140‑1 (MQ=255)

                           atatCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCaa                                                                                                                <  2:94598/133‑1 (MQ=255)

                           atatCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCaa                                                                                                                >  1:94598/1‑133 (MQ=255)

                            tatCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACg                                                                                                        <  1:129391/140‑1 (MQ=255)

                              tCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGAt                                                                                                      >  1:330074/1‑140 (MQ=255)

                              tCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGAt                                                                                                      >  2:167405/1‑140 (MQ=255)

                                cATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCt                                                                                                    >  1:732855/1‑140 (MQ=255)

                                 aTGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTg                                                                                                   <  1:770699/140‑1 (MQ=255)

                                  tGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTgg                                                                                                  <  1:861220/140‑1 (MQ=255)

                                  tGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTgg                                                                                                  <  2:705329/140‑1 (MQ=255)

                                  tGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTgg                                                                                                  <  2:34159/140‑1 (MQ=255)

                                   gCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGgt                                                                                                 >  2:328271/1‑140 (MQ=255)

                                      cGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTgg                                                                                                  >  1:631328/1‑136 (MQ=255)

                                      cGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTgg                                                                                                  <  2:631328/136‑1 (MQ=255)

                                        ccATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGttt                                                                                            >  1:430852/1‑140 (MQ=255)

                                            cACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCAt                                                                                        >  1:568182/1‑140 (MQ=255)

                                               ggCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCaa                                                                                     <  2:898250/140‑1 (MQ=255)

                                                gCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAAt                                                                                    <  2:716710/140‑1 (MQ=255)

                                                    cTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGAt                                                                                <  2:709073/140‑1 (MQ=255)

                                                     tACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGAtt                                                                               >  1:502226/1‑140 (MQ=255)

                                                      aCGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTc                                                                              <  1:868700/140‑1 (MQ=255)

                                                      aCGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTc                                                                              <  2:333514/140‑1 (MQ=255)

                                                       cgcgACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTCCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCa                                                                             >  1:154793/1‑140 (MQ=255)

                                                         cgACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCaaa                                                                           <  2:330074/140‑1 (MQ=255)

                                                           aCGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACg                                                                         <  2:568977/140‑1 (MQ=255)

                                                           aCGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACg                                                                         <  1:250207/140‑1 (MQ=255)

                                                           aCGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACg                                                                         <  2:430852/140‑1 (MQ=255)

                                                           aCGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTCCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACg                                                                         <  2:154793/140‑1 (MQ=255)

                                                                         ttGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCt                                                           >  2:894577/1‑140 (MQ=255)

                                                                          tGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCtt                                                          <  2:568182/140‑1 (MQ=255)

                                                                                  ggCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCa                                                  >  1:54550/1‑140 (MQ=255)

                                                                                   gCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCaa                                                 >  1:181991/1‑140 (MQ=255)

                                                                                       tCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACTGAGGATAGGAGGCTTCGGTAGCAAAACg                                             >  2:999150/1‑140 (MQ=255)

                                                                                        cAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGa                                            <  2:732855/140‑1 (MQ=255)

                                                                                                 ggTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCg                                   >  2:442367/1‑140 (MQ=255)

                                                                                                       agaAAGTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCt                             >  1:446808/1‑140 (MQ=255)

                                                                                                            gTGCAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGc                        >  2:246691/1‑140 (MQ=255)

                                                                                                               cAGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGa                     <  1:894577/140‑1 (MQ=255)

                                                                                                                aGGTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGaa                    <  1:442367/140‑1 (MQ=255)

                                                                                                                 ggTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGaaa                   >  1:148258/1‑140 (MQ=255)

                                                                                                                  gTTGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAg                  >  2:558364/1‑140 (MQ=255)

                                                                                                                   ttGCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGa                 >  2:945087/1‑140 (MQ=255)

                                                                                                                     gCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACTGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACt               <  1:999150/140‑1 (MQ=255)

                                                                                                                     gCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGaa                    <  1:595268/135‑1 (MQ=255)

                                                                                                                     gCATCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGaa                    >  2:595268/1‑135 (MQ=255)

                                                                                                                       aTCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTaa             >  2:200448/1‑140 (MQ=255)

                                                                                                                       aTCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTaa             <  2:246855/140‑1 (MQ=255)

                                                                                                                       aTCAATCTCTTTACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTaa             >  1:637615/1‑140 (MQ=255)

                                                                                                                                tttACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTAAAACCTGCaa    >  2:8630/1‑140 (MQ=255)

                                                                                                                                  tACACGGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTAAAACCTGCAAtt  >  2:248101/1‑140 (MQ=255)

AGCACCTGCTTTTCACGCTCCGGAGTGATATCCATGCCCGCCATCACGGCTTCTACGCGACGGAATTTCAGGCTTGGGATCAGGCTGTCAAACGCCTGGTTAGAGAAAGTGCAGGTTGCATCAATCTCTTTACACAGCGCTTGTGCCAGGTCGACGTCAAAACCAACGATCTGGTTGTTTGCATCAATCGATTCAAACGGAGGATAGGAGGCTTCGGTAGCAAAACGAATGGTTTCGGCAGCTGTGGCGGAAAGACTAAAACCTGCAATT  >  NC_000913/902693‑902962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A