Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	139	53.6	1844736	98.1%	1809686	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,437,183	T→C	noncoding (63/109 nt)	micC →	small regulatory RNA MicC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,437,183	0	T	C	100.0%	139.5 / NA	40	noncoding (63/109 nt)	micC	small regulatory RNA MicC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/18); total (22/18)

TCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGC  >  NC_000913/1437058‑1437315

tCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATaaaaa                                                                                                                        >  2:764508/1‑140 (MQ=255)

 cGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTccc                                                                                                                                    >  1:590552/1‑127 (MQ=255)

 cGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAg                                                                                                                       >  2:413490/1‑140 (MQ=255)

  gAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGa                                                                                                                      <  2:371595/140‑1 (MQ=255)

  gAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGa                                                                                                                      <  2:425489/140‑1 (MQ=255)

     gATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACaa                                                                                                                   <  2:300400/140‑1 (MQ=255)

        aataCATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGcc                                                                                                                >  2:363204/1‑140 (MQ=255)

          tacatacaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCg                                                                                                              >  2:133540/1‑140 (MQ=255)

          tacatacaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCg                                                                                                              <  1:730810/140‑1 (MQ=255)

               acaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAg                                                                                                         >  1:882383/1‑140 (MQ=255)

                caAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAgt                                                                                                        >  1:685765/1‑140 (MQ=255)

                   aaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAgtcgt                                                                                                     >  2:543843/1‑140 (MQ=255)

                                 ttttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCtttttttt                                                                                       <  2:882383/140‑1 (MQ=255)

                                 ttttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCtttttttt                                                                                       <  1:363204/140‑1 (MQ=255)

                                   ttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTa                                                                                     >  1:417792/1‑140 (MQ=255)

                                   ttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTa                                                                                     >  2:289835/1‑140 (MQ=255)

                                   ttAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTAGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTa                                                                                     >  1:801420/1‑140 (MQ=255)

                                            tataCGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGAt                                                                            <  2:417792/140‑1 (MQ=255)

                                                 gTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATcc                                                                       <  1:764508/140‑1 (MQ=255)

                                                     ttCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTAt                                                                   >  2:445126/1‑140 (MQ=255)

                                                     ttCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTAt                                                                   >  2:194433/1‑140 (MQ=255)

                                                        tGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCa                                                                <  1:644814/140‑1 (MQ=255)

                                                         gcgcGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCag                                                               <  2:475899/140‑1 (MQ=255)

                                                          cgcgGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCaga                                                              >  2:121707/1‑140 (MQ=255)

                                                           gcgGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCagag                                                             >  1:109034/1‑140 (MQ=255)

                                                              ggTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCAt                                                          <  1:289835/140‑1 (MQ=255)

                                                                   tatGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAAt                                                     <  2:663172/140‑1 (MQ=255)

                                                                           tATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTg                                             >  1:432024/1‑140 (MQ=255)

                                                                            aTTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGc                                            >  1:420383/1‑140 (MQ=255)

                                                                                   caGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTcc                                    >  1:387784/1‑140 (MQ=255)

                                                                                          tattttCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCtttt                              <  2:801420/140‑1 (MQ=255)

                                                                                          tattttCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCtttt                              <  1:445126/140‑1 (MQ=255)

                                                                                          tattttCTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCtttt                              >  2:838229/1‑140 (MQ=255)

                                                                                                cTGTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTACCGCTTTTCCGGCCa                       <  2:387784/140‑1 (MQ=255)

                                                                                                  gTTGGGCCATTGCATTGCCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCAt                      <  2:432024/140‑1 (MQ=255)

                                                                                                           ttgcattgcCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTtgt                  >  2:156988/1‑135 (MQ=255)

                                                                                                           ttgcattgcCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTtgt                  <  1:156988/135‑1 (MQ=255)

                                                                                                            tgcattgcCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAgg            <  1:194433/140‑1 (MQ=255)

                                                                                                                ttgcCACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGt        >  2:64181/1‑140 (MQ=255)

                                                                                                                    cACTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATa    >  2:608681/1‑140 (MQ=255)

                                                                                                                      cTGATTTCCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGc  >  1:574809/1‑140 (MQ=255)

TCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGC  >  NC_000913/1437058‑1437315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A