Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F13 I1 R1 28 562.2 19051950 96.7% 18423235 140.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,584,362 A→G intergenic (+53/‑42) yrhA → / → yrhD putative uncharacterized protein YrhA/uncharacterized protein YrhD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,584,3620AG99.9% 2724.4 / NA 646intergenic (+53/‑42)yrhA/yrhDputative uncharacterized protein YrhA/uncharacterized protein YrhD
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (353/292);  total (354/292)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 646 total aligned reads displayed.

GAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGA  >  NC_000913/3584217‑3584507
                                                                                                                                                 |                                                                                                                                                 
 aaaTTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTGCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCcag                                                                                                                                               >  2:7020776/1‑149 (MQ=255)
  aaTTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCca                                                                                                                                                >  2:7020784/1‑147 (MQ=255)
     tAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCTAGCAGa                                                                                                                                           >  2:7020797/1‑149 (MQ=255)
     tAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGa                                                                                                                                           >  1:7020798/1‑149 (MQ=255)
       gagaTAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGaaaa                                                                                                                                        >  1:7020810/1‑150 (MQ=255)
           taataTTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAATAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTcc                                                                                                                                    >  2:7020818/1‑150 (MQ=255)
           taataTTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTcc                                                                                                                                    <  1:7020248/150‑1 (MQ=255)
           taataTTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATAAAAAAAAAAAAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAAt                                                                                                                                       <  2:7020240/147‑1 (MQ=255)
             atatTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTcc                                                                                                                                    >  1:7020824/1‑148 (MQ=255)
                  ggCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTc                                                                                                                              >  1:7020833/1‑149 (MQ=255)
                    cacaGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGaa                                                                                                                           <  2:7020581/150‑1 (MQ=255)
                      caGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAAt                                                                                                                         >  1:7020844/1‑150 (MQ=255)
                       aGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCcag                                                                                                                                               <  2:7020060/127‑1 (MQ=255)
                          aaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAg                                                                                                                     >  1:7020853/1‑150 (MQ=255)
                          aaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAg                                                                                                                     <  2:7020375/150‑1 (MQ=255)
                          aaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAg                                                                                                                     <  2:7020216/150‑1 (MQ=255)
                          aaaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAg                                                                                                                     >  2:7020850/1‑150 (MQ=255)
                           aaTATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGc                                                                                                                    <  1:7019353/150‑1 (MQ=255)
                            atatatTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCa                                                                                                                   <  1:7020026/150‑1 (MQ=255)
                             tatatTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGa                                                                                                                                           >  2:7020857/1‑125 (MQ=255)
                               tatTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTg                                                                                                                <  2:7020337/150‑1 (MQ=255)
                                atTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGc                                                                                                                    <  1:7020354/145‑1 (MQ=255)
                                atTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGt                                                                                                                 <  2:7020316/148‑1 (MQ=255)
                                 ttCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGc                                                                                                               >  1:7020868/1‑149 (MQ=255)
                                 ttCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGc                                                                                                               <  1:7020106/149‑1 (MQ=255)
                                   cAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCaa                                                                                                             <  1:7020214/149‑1 (MQ=255)
                                   cAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACACTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCaa                                                                                                             <  2:7020113/149‑1 (MQ=255)
                                     gTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCt                                                                                                          <  2:7020275/150‑1 (MQ=255)
                                     gTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCt                                                                                                          <  2:7020532/150‑1 (MQ=255)
                                      ttCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTa                                                                                                         >  1:7020880/1‑150 (MQ=255)
                                      ttCGTTTAGTGATTTCTCTGCATTCTTAAAGGAAGTCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAGTGTAAACCATGCCATCTTTTTAGAGATTGCCAGNAGAAAATTCCTTGTTCGAAATTAAGCAGTGCAAGCTa                                                                                                         >  2:7020879/1‑150 (MQ=255)
                                           ttAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGa                                                                                                     >  2:7020889/1‑149 (MQ=255)
                                              gTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGaaaaa                                                                                                 <  1:7020501/150‑1 (MQ=255)
                                               tGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAAc                                                                                                >  1:7020897/1‑150 (MQ=255)
                                                gATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACt                                                                                               >  2:7020899/1‑150 (MQ=255)
                                                 aTTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACt                                                                                               >  1:7020906/1‑149 (MQ=255)
                                                     ctctTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACa                                                                                           >  2:7020916/1‑149 (MQ=255)
                                                      tctTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACa                                                                                           <  2:7019886/148‑1 (MQ=255)
                                                      tctTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAAc                                                                                         >  1:7020919/1‑150 (MQ=255)
                                                         tCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATCGAAAAACTTACAACgg                                                                                       >  2:7020928/1‑149 (MQ=255)
                                                          cATTCTTAAACGAAATGATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAATTTACAACgg                                                                                       <  2:7020364/148‑1 (MQ=255)
                                                          cATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGa                                                                                      <  1:7020620/149‑1 (MQ=255)
                                                           aTTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGaa                                                                                     <  1:7020539/149‑1 (MQ=255)
                                                           aTTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAAc                                                                                    >  1:7020935/1‑150 (MQ=255)
                                                             tCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACt                                                                                   >  2:7020940/1‑149 (MQ=255)
                                                              cTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTa                                                                                  <  1:7020171/149‑1 (MQ=255)
                                                              cTTAAACGAAAACATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACa                                                                                           <  1:7020341/140‑1 (MQ=255)
                                                               ttAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTaca                                                                                >  1:7020945/1‑150 (MQ=255)
                                                               atAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATg                                                                                                       <  2:7020414/126‑1 (MQ=255)
                                                                 aaaCGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTac                                                                                 <  1:7020285/147‑1 (MQ=255)
                                                                    cGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTcc                                                                            >  2:7020956/1‑149 (MQ=255)
                                                                    cGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCt                                                                           <  2:7020448/150‑1 (MQ=255)
                                                                    cGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCt                                                                           <  1:7020484/150‑1 (MQ=255)
                                                                     gAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCt                                                                           >  1:7020959/1‑149 (MQ=255)
                                                                       aaTCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCtt                                                                          <  2:7020266/148‑1 (MQ=255)
                                                                        aTCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAg                                                                       >  1:7020967/1‑150 (MQ=255)
                                                                           aTGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTga                                                                    <  1:7020383/150‑1 (MQ=255)
                                                                            tGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGt                                                                      >  1:7020977/1‑147 (MQ=255)
                                                                               aCAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATg                                                                >  2:7020980/1‑150 (MQ=255)
                                                                                   ttgttCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGAcc                                                            >  1:7020990/1‑150 (MQ=255)
                                                                                    tgttCATAATAATCAAAAGGAAACAAAAATCATTGTAAACAATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGGACTacacgc                                                                             >  2:7020991/1‑130 (MQ=255)
                                                                                      ttCATAATAATCAAAAGGAAACAAAAATCATTGTAAAGCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCANTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGa                                                          <  1:7020435/149‑1 (MQ=255)
                                                                                         ataataATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGa                                                       >  1:7021004/1‑149 (MQ=255)
                                                                                            ataatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACAt                                                    >  2:7021006/1‑149 (MQ=255)
                                                                                             taatCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGt                                                  <  2:7020302/150‑1 (MQ=255)
                                                                                                  aaaaGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGtct                                             >  1:7021017/1‑150 (MQ=255)
                                                                                                    aaGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGtctc                                            >  2:7021021/1‑149 (MQ=255)
                                                                                                    aaGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTctct                                           <  2:7020806/150‑1 (MQ=255)
                                                                                                       gAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAtt                                        >  1:7021032/1‑150 (MQ=255)
                                                                                                          aCAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTAttt                                       >  2:7021035/1‑148 (MQ=255)
                                                                                                           cAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAg                                    <  1:7020517/150‑1 (MQ=255)
                                                                                                            aaaaaTCATTGTAAACCATGCGATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGCGATGGACCGAAGACATGTAGTCTCTATTTTAGc                                   <  2:7020467/150‑1 (MQ=255)
                                                                                                            aaaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGc                                   >  1:7021043/1‑150 (MQ=255)
                                                                                                             aaaaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGcc                                  <  2:7020486/150‑1 (MQ=255)
                                                                                                              aaaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGcc                                  >  1:7021053/1‑149 (MQ=255)
                                                                                                              aaaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGc                                   >  2:7021052/1‑148 (MQ=255)
                                                                                                              aaaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCg                                 <  1:7020399/150‑1 (MQ=255)
                                                                                                               aaTCATTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGa                                <  1:7020328/150‑1 (MQ=255)
                                                                                                                   aTTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATa                            <  1:7020151/150‑1 (MQ=255)
                                                                                                                   aTTGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTAGTTCGATATTTAGCAGTGCAAGCAATGGAAAAACTGACAACGGAACTACACTCCTTAAGTGAGATGGACCGCAGACATGTAGTCTCTATTTTAGCCGaaa                              >  2:7021064/1‑148 (MQ=255)
                                                                                                                    ttGTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAg                           >  1:7021067/1‑150 (MQ=255)
                                                                                                                      gTAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGc                          >  1:7021076/1‑149 (MQ=255)
                                                                                                                       tAAACCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCt                         <  1:7020579/149‑1 (MQ=255)
                                                                                                                         aaCCATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAACTTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGACCTACACTc                                                                             >  2:7021083/1‑95 (MQ=255)
                                                                                                                           ccATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGGACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATgg                    >  1:7021088/1‑150 (MQ=255)
                                                                                                                            cATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATgg                    >  2:7021092/1‑149 (MQ=255)
                                                                                                                            cATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGc                   <  1:7020413/150‑1 (MQ=255)
                                                                                                                            cATGCCATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGc                   <  2:7020687/150‑1 (MQ=255)
                                                                                                                                ccATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTat                >  1:7021102/1‑149 (MQ=255)
                                                                                                                                ccATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTat                <  1:7020760/149‑1 (MQ=255)
                                                                                                                                 cATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatga              <  1:7020694/150‑1 (MQ=255)
                                                                                                                                 cATCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatga              <  1:7020457/150‑1 (MQ=255)
                                                                                                                                   tCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatgat             >  1:7021112/1‑149 (MQ=255)
                                                                                                                                   tCTTTTTAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTatgat             >  2:7021109/1‑149 (MQ=255)
                                                                                                                                     tttttAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAAt                      >  2:7021121/1‑138 (MQ=255)
                                                                                                                                      ttttAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTACAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCGCTATTTTAGCCGAAATAGCTAATGGCTATGATGAtt         >  1:7021125/1‑150 (MQ=255)
                                                                                                                                       tttAGAGATTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATgatgat          <  2:7020427/148‑1 (MQ=255)
                                                                                                                                           gagaTTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTaa     >  2:7021132/1‑149 (MQ=255)
                                                                                                                                             gaTTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGCCCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAGTGGCTAtgatga           >  1:7021143/1‑141 (MQ=255)
                                                                                                                                             gaTTGCCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGa  <  1:7020786/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
GAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAAACCATGCCATCTTTTTAGAGATTACCAGCAGAAAATTCCTTGTTCGAAATTTAGCAGTGCAAGCTATGGAAAAACTTACAACGGAACTACACTCCTTAAGTGAGATGGACCGAAGACATGTAGTCTCTATTTTAGCCGAAATAGCTAATGGCTATGATGATTTTAATGA  >  NC_000913/3584217‑3584507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A