Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,274,409 C→T G77G (GGC→GGT)  yejB → putative oligopeptide ABC transporter membrane subunit YejB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,274,4090CT100.0% 911.7 / NA 228G77G (GGC→GGT) yejBputative oligopeptide ABC transporter membrane subunit YejB
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (109/119);  total (109/119)

Only 100 of 232 total aligned reads displayed.

GTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACT  >  NC_000913/2274312‑2274506
                                                                                                 |                                                                                                 
 tAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAc                                                                                               <  1:2952980/101‑1 (MQ=255)
 tAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAc                                                                                               <  2:2953664/101‑1 (MQ=255)
 tAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAc                                                                                               <  1:2953281/101‑1 (MQ=255)
 tAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAc                                                                                               >  1:2953667/1‑101 (MQ=255)
    tGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAcgcg                                                                                            <  1:2953354/101‑1 (MQ=255)
      ccGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGa                                                                                          >  1:2953670/1‑101 (MQ=255)
      ccGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGa                                                                                          <  1:2953422/101‑1 (MQ=255)
       cGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAc                                                                                               <  2:2953293/95‑1 (MQ=255)
       cGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGAt                                                                                         <  2:2953112/101‑1 (MQ=255)
        ggAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGAtt                                                                                        <  2:2953260/101‑1 (MQ=255)
        ggAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGAtt                                                                                        >  1:2953672/1‑101 (MQ=255)
          aGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAg                                                                                      <  2:2953411/101‑1 (MQ=255)
          aGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAg                                                                                      >  2:2953673/1‑101 (MQ=255)
            tATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGAt                                                                                    >  1:2953677/1‑101 (MQ=255)
              ttACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATcc                                                                                  >  2:2953678/1‑101 (MQ=255)
                aCCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCa                                                                                 >  1:2953682/1‑100 (MQ=255)
                 cccGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGa                                                                               <  1:2953418/101‑1 (MQ=255)
                  ccGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATcc                                                                                  <  2:2953158/97‑1 (MQ=255)
                  ccGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGaa                                                                              <  1:2953299/101‑1 (MQ=255)
                   cGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAg                                                                             >  2:2953685/1‑101 (MQ=255)
                   cGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAg                                                                             <  2:2953329/101‑1 (MQ=255)
                   cGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAg                                                                             <  1:2953259/101‑1 (MQ=255)
                    ggCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGt                                                                            <  1:2953230/101‑1 (MQ=255)
                    ggCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGt                                                                            >  1:2953686/1‑101 (MQ=255)
                     gcgcAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTg                                                                           <  2:2953380/101‑1 (MQ=255)
                        cAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATc                                                                        <  2:2953216/101‑1 (MQ=255)
                        cAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATc                                                                        <  2:2953425/101‑1 (MQ=255)
                         aGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCg                                                                       >  2:2953690/1‑101 (MQ=255)
                          ggCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGc                                                                      <  2:2953253/101‑1 (MQ=255)
                           gCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCt                                                                     >  2:2953693/1‑101 (MQ=255)
                            cGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTg                                                                    <  2:2953200/101‑1 (MQ=255)
                            cGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTg                                                                    <  1:2953331/101‑1 (MQ=255)
                             ggTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGAcg                                                                                              <  2:2952973/74‑1 (MQ=255)
                             ggTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTga                                                                   <  1:2953321/101‑1 (MQ=255)
                              gTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTgag                                                                  <  1:2953340/101‑1 (MQ=255)
                              gTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTgag                                                                  <  1:2953397/101‑1 (MQ=255)
                                gAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGAt                                                                <  1:2953172/101‑1 (MQ=255)
                                gAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGAt                                                                >  2:2953695/1‑101 (MQ=255)
                                gAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGAt                                                                <  2:2953403/101‑1 (MQ=255)
                                 aaGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATc                                                               >  1:2953696/1‑101 (MQ=255)
                                  aGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCa                                                              <  2:2953171/101‑1 (MQ=255)
                                     tgtTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTc                                                           >  2:2953698/1‑101 (MQ=255)
                                        tCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATc                                                        <  1:2953207/101‑1 (MQ=255)
                                          gTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTCCCGTGGTGGACGCGGACTAGATCCAGAAGTGATCg                                                                       <  2:2953235/84‑1 (MQ=255)
                                          gTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGc                                                      >  1:2953703/1‑101 (MQ=255)
                                           tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt                                                     <  2:2953371/101‑1 (MQ=255)
                                           tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt                                                     <  1:2953272/101‑1 (MQ=255)
                                           tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt                                                     <  1:2953183/101‑1 (MQ=255)
                                           tGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt                                                     >  1:2953705/1‑101 (MQ=255)
                                            gccagccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTa                                                    >  2:2953707/1‑101 (MQ=255)
                                            gccagccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTa                                                    <  1:2953382/101‑1 (MQ=255)
                                            gccagccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTa                                                    <  1:2953465/101‑1 (MQ=255)
                                              cagccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACg                                                  <  2:2953302/101‑1 (MQ=255)
                                               agccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACgg                                                 <  1:2953217/101‑1 (MQ=255)
                                               agccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACgg                                                 >  1:2953709/1‑101 (MQ=255)
                                                 ccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGtt                                               >  2:2953712/1‑101 (MQ=255)
                                                 ccaTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGtt                                               <  1:2953313/101‑1 (MQ=255)
                                                  caTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGttt                                              <  2:2953581/101‑1 (MQ=255)
                                                  caTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGttt                                              >  2:2953715/1‑101 (MQ=255)
                                                   aTGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGtttt                                             <  2:2953396/101‑1 (MQ=255)
                                                      cgcAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGAt                                          >  2:2953720/1‑101 (MQ=255)
                                                      cgcAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGAt                                          >  1:2953718/1‑101 (MQ=255)
                                                        cAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATaa                                        <  1:2953361/101‑1 (MQ=255)
                                                         aaaCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAg                                       >  1:2953723/1‑101 (MQ=255)
                                                         aaaCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAg                                       >  1:2953721/1‑101 (MQ=255)
                                                         aaaCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAg                                       <  1:2953291/101‑1 (MQ=255)
                                                          aaCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGc                                      >  1:2953729/1‑101 (MQ=255)
                                                          aaCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGc                                      >  1:2953726/1‑101 (MQ=255)
                                                           aCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGcc                                     >  1:2953732/1‑101 (MQ=255)
                                                           aCGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGcc                                     >  2:2953731/1‑101 (MQ=255)
                                                            cGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCg                                    >  1:2953735/1‑101 (MQ=255)
                                                             gggTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGa                                   >  2:2953737/1‑101 (MQ=255)
                                                              ggTGTCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAt                                  <  1:2953123/101‑1 (MQ=255)
                                                                tgtCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAt                                  >  1:2953738/1‑99 (MQ=255)
                                                                 gtCGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCa                               <  2:2953317/101‑1 (MQ=255)
                                                                   cGGCAATATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACg                             <  2:2953247/101‑1 (MQ=255)
                                                                       aaTATCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACg                         <  2:2953280/101‑1 (MQ=255)
                                                                         tatCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCGGa                                   >  1:2953744/1‑89 (MQ=255)
                                                                         tatCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGtt                       <  2:2953367/101‑1 (MQ=255)
                                                                         tatCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGtt                       >  2:2953742/1‑101 (MQ=255)
                                                                         tatCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGtt                       <  1:2953486/101‑1 (MQ=255)
                                                                           tCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTAc                     >  2:2953748/1‑101 (MQ=255)
                                                                           tCAGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTAc                     >  1:2953747/1‑101 (MQ=255)
                                                                             aGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACtt                   >  1:2953750/1‑101 (MQ=255)
                                                                             aGCGACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACtt                   <  2:2953351/101‑1 (MQ=255)
                                                                                gACAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCaa                <  2:2953227/101‑1 (MQ=255)
                                                                                 aCAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCaaa               >  1:2953754/1‑101 (MQ=255)
                                                                                 aCAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCaaa               >  2:2953753/1‑101 (MQ=255)
                                                                                  cAGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCaaaa              <  2:2953322/101‑1 (MQ=255)
                                                                                   aGTAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAAt             >  2:2953758/1‑101 (MQ=255)
                                                                                     tAATTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGc           >  2:2953761/1‑101 (MQ=255)
                                                                                      aaTTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTgag                                                                  >  1:2953763/1‑45 (MQ=255)
                                                                                       aTTACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGctc         >  2:2953764/1‑101 (MQ=255)
                                                                                         tACCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTg       >  2:2953767/1‑101 (MQ=255)
                                                                                          aCCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTgg      <  1:2953594/101‑1 (MQ=255)
                                                                                          aCCGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTgg      >  2:2953769/1‑101 (MQ=255)
                                                                                           ccGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTggg     >  2:2953772/1‑101 (MQ=255)
                                                                                           ccGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTggg     >  1:2953773/1‑101 (MQ=255)
                                                                                            cGTGGTGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGa    <  2:2953449/101‑1 (MQ=255)
                                                                                             gtggtgGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGAc   <  2:2953616/101‑1 (MQ=255)
                                                                                                 |                                                                                                 
GTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTGCCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGATCCACGAACGTTACTTCAAAATGCTCTGGGACT  >  NC_000913/2274312‑2274506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A