Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,314,061 G→A A192T (GCC→ACC)  rcsD → RcsD phosphotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,314,0610GA100.0% 852.6 / NA 218A192T (GCC→ACC) rcsDRcsD phosphotransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (127/91);  total (127/91)

Only 100 of 218 total aligned reads displayed.

CAACCCTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACGCCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAGGACA  >  NC_000913/2313963‑2314158
                                                                                                  |                                                                                                 
cAACCCTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACAcc                                                                                                 <  1:3002220/101‑1 (MQ=255)
 aaCCCTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACAccc                                                                                                >  1:3002590/1‑101 (MQ=255)
   cccTACCACTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTc                                                                                              >  2:3002592/1‑101 (MQ=255)
    ccTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCg                                                                                             <  1:3002062/101‑1 (MQ=255)
    ccTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCg                                                                                             <  2:3002305/101‑1 (MQ=255)
    ccTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCg                                                                                             >  2:3002594/1‑101 (MQ=255)
      tACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGAt                                                                                           <  2:3002357/101‑1 (MQ=255)
      tACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGAt                                                                                           >  1:3002595/1‑101 (MQ=255)
       aCCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATg                                                                                          >  2:3002597/1‑101 (MQ=255)
        ccccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACAcc                                                                                                 <  2:3002244/93‑1 (MQ=255)
        ccccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGa                                                                                         >  1:3002602/1‑101 (MQ=255)
        ccccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGa                                                                                         >  2:3002601/1‑101 (MQ=255)
        ccccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGa                                                                                         <  2:3002430/101‑1 (MQ=255)
         cccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCTTGCAGAGATGTTGCAACAGGCCAACACCCTCGATg                                                                                          <  1:3002399/99‑1 (MQ=255)
          ccTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAc                                                                                       >  2:3002604/1‑101 (MQ=255)
           cTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAcg                                                                                      >  2:3002606/1‑101 (MQ=255)
           cTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAcg                                                                                      <  2:3002291/101‑1 (MQ=255)
            ttAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAcgc                                                                                     <  1:3002264/101‑1 (MQ=255)
             tAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAcgcg                                                                                    >  2:3002610/1‑101 (MQ=255)
             tAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAAcgcg                                                                                    >  1:3002609/1‑101 (MQ=255)
              aaaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGa                                                                                   <  2:3002263/101‑1 (MQ=255)
              aaaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGa                                                                                   >  1:3002613/1‑101 (MQ=255)
              aaaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGa                                                                                   <  2:3002279/101‑1 (MQ=255)
               aaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATg                                                                                          >  2:3002616/1‑93 (MQ=255)
               aaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGaa                                                                                  <  1:3002297/101‑1 (MQ=255)
               aaGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGaa                                                                                  >  1:3002615/1‑101 (MQ=255)
                aGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGaaa                                                                                 <  1:3002324/101‑1 (MQ=255)
                   tctcACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCt                                                                              >  1:3002620/1‑101 (MQ=255)
                   tctcACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCt                                                                              >  2:3002621/1‑101 (MQ=255)
                      cACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCtttt                                                                           <  2:3002418/101‑1 (MQ=255)
                        ccTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCt                                                                         >  1:3002624/1‑101 (MQ=255)
                         cTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTa                                                                        >  2:3002625/1‑101 (MQ=255)
                          tCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTaa                                                                       <  2:3002233/101‑1 (MQ=255)
                           ccGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAAc                                                                      >  1:3002629/1‑101 (MQ=255)
                            cGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACa                                                                     >  2:3002630/1‑101 (MQ=255)
                              gATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATg                                                                   >  2:3002632/1‑101 (MQ=255)
                               aTTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATgc                                                                  >  2:3002634/1‑101 (MQ=255)
                                 ttAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATgcgc                                                                >  1:3002636/1‑101 (MQ=255)
                                 ttAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATgcgc                                                                <  1:3002281/101‑1 (MQ=255)
                                 ttAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATgcgc                                                                >  2:3002638/1‑101 (MQ=255)
                                  tAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGcgcc                                                               <  1:3002350/101‑1 (MQ=255)
                                  tAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGcgcc                                                               <  2:3002367/101‑1 (MQ=255)
                                   aaaGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGcgccg                                                              <  2:3002288/101‑1 (MQ=255)
                                    aaGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGcgccgc                                                             <  2:3002123/101‑1 (MQ=255)
                                     aGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCgccgcc                                                            <  2:3002274/101‑1 (MQ=255)
                                     aGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCgccgcc                                                            >  1:3002644/1‑101 (MQ=255)
                                     aGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCgccgcc                                                            >  2:3002643/1‑101 (MQ=255)
                                      gAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcct                                                           <  2:3002257/101‑1 (MQ=255)
                                      gAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcct                                                           >  1:3002647/1‑101 (MQ=255)
                                      gAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcct                                                           >  2:3002648/1‑101 (MQ=255)
                                        aTCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcctg                                                          >  2:3002651/1‑100 (MQ=255)
                                           gACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcctggcct                                                      >  1:3002653/1‑101 (MQ=255)
                                            aCCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcctggcctg                                                     >  2:3002654/1‑101 (MQ=255)
                                            aCCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCgcctggcctg                                                     <  1:3002290/101‑1 (MQ=255)
                                               gTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCa                                                  >  1:3002658/1‑101 (MQ=255)
                                               gTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCa                                                  >  2:3002656/1‑101 (MQ=255)
                                                 cAGCGACATTGTTGATTCACGTCGTTCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGa                                                <  2:3002302/101‑1 (MQ=255)
                                                 cAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGa                                                >  1:3002663/1‑101 (MQ=255)
                                                 cAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGa                                                <  1:3002256/101‑1 (MQ=255)
                                                  aGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGaa                                               >  2:3002664/1‑101 (MQ=255)
                                                    cGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACg                                             >  1:3002667/1‑101 (MQ=255)
                                                    cGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACg                                             >  2:3002668/1‑101 (MQ=255)
                                                     gACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACgg                                            >  1:3002670/1‑101 (MQ=255)
                                                       cATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCtt                                                                             >  1:3002673/1‑66 (MQ=255)
                                                       cATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCa                                                  <  1:3002271/93‑1 (MQ=255)
                                                       cATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTc                                          <  2:3002341/101‑1 (MQ=255)
                                                        aTTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCa                                         >  2:3002675/1‑101 (MQ=255)
                                                         ttgttgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCAt                                        <  2:3002016/101‑1 (MQ=255)
                                                         ttgttgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCAt                                        <  2:3002193/101‑1 (MQ=255)
                                                            ttgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTAc                                     >  2:3002679/1‑101 (MQ=255)
                                                            ttgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTAc                                     >  2:3002677/1‑101 (MQ=255)
                                                            ttgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTAc                                     <  1:3002319/101‑1 (MQ=255)
                                                             tgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGt                                           >  1:3002681/1‑94 (MQ=255)
                                                             tgATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACt                                    <  1:3002371/101‑1 (MQ=255)
                                                              gATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACtt                                   >  2:3002682/1‑101 (MQ=255)
                                                                  cACGTCGTGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACa                               <  2:3002182/101‑1 (MQ=255)
                                                                    cgtcgtGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACAtt                             <  1:3002336/101‑1 (MQ=255)
                                                                    cgtcgtGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACAtt                             >  1:3002685/1‑101 (MQ=255)
                                                                     gtcgtGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGaa                                                                                  >  1:3002688/1‑47 (MQ=255)
                                                                         tGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGta                        >  2:3002693/1‑101 (MQ=255)
                                                                         tGCAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGta                        >  1:3002691/1‑101 (MQ=255)
                                                                           cAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGtact                      >  1:3002694/1‑101 (MQ=255)
                                                                           cAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGtact                      <  1:3002463/101‑1 (MQ=255)
                                                                           cAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGtact                      <  1:3002140/101‑1 (MQ=255)
                                                                           cAGAGATGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGtact                      <  2:3002316/101‑1 (MQ=255)
                                                                              agaTGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTAcc                   >  1:3002697/1‑101 (MQ=255)
                                                                              agaTGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTAcc                   >  2:3002698/1‑101 (MQ=255)
                                                                                 tGTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCttt                >  2:3002701/1‑101 (MQ=255)
                                                                                  gTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTa               >  1:3002703/1‑101 (MQ=255)
                                                                                  gTTGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTa               <  1:3002200/101‑1 (MQ=255)
                                                                                   ttGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTaa              <  1:3002248/101‑1 (MQ=255)
                                                                                   ttGCAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTaa              <  2:3002323/101‑1 (MQ=255)
                                                                                      cAACAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAAcca           <  1:3002184/101‑1 (MQ=255)
                                                                                       aaCAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAAccag          >  2:3002705/1‑101 (MQ=255)
                                                                                        aCAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCtt                 >  1:3002708/1‑93 (MQ=255)
                                                                                         cAGGCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATgcg                                                                 >  2:3002709/1‑44 (MQ=255)
                                                                                            gCCAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAgg     >  1:3002712/1‑101 (MQ=255)
                                                                                             ccAACACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAGGa    <  1:3002105/101‑1 (MQ=255)
                                                                                               aaCACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAGGACa  <  2:3002478/101‑1 (MQ=255)
                                                                                               aaCACCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAGGACa  >  1:3002714/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
CAACCCTACCCCTTAAAGATCTCACCTCCGGATTTAAAGAATCGACCGTCAGCGACATTGTTGATTCACGTCGTGCAGAGATGTTGCAACAGGCCAACGCCCTCGATGAACGCGAAAGCTTTTCTAACATGCGCCGCCTGGCCTGGCAGAACGGTCATTACTTTACATTGCGTACTACCTTTAACCAGCCAGGACA  >  NC_000913/2313963‑2314158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A