Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,877,743 G→A intergenic (+125/+826) iap → / ← cas2 alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,877,7430GA100.0% 1164.9 / NA 284intergenic (+125/+826)iap/cas2alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (142/142);  total (142/142)

Only 100 of 294 total aligned reads displayed.

TCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTAAC  >  NC_000913/2877645‑2877840
                                                                                                  |                                                                                                 
tCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTaaa                                                                                                 >  2:3720834/1‑101 (MQ=255)
tCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTaaa                                                                                                 <  1:3720575/101‑1 (MQ=255)
 cTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTaaaa                                                                                                <  2:3720365/101‑1 (MQ=255)
    ccGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAAtct                                                                                             <  1:3720307/101‑1 (MQ=255)
     cGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAAtctc                                                                                            >  2:3720842/1‑101 (MQ=255)
     cGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAAtctc                                                                                            >  1:3720840/1‑101 (MQ=255)
     cGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAAtctc                                                                                            <  2:3720329/101‑1 (MQ=255)
         gagGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcg                                                                                        >  1:3720846/1‑101 (MQ=255)
         gagGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcg                                                                                        <  1:3720500/101‑1 (MQ=255)
          agGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgt                                                                                       <  1:3720492/101‑1 (MQ=255)
           ggCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtc                                                                                      <  1:3720368/101‑1 (MQ=255)
           ggCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtc                                                                                      <  1:3720498/101‑1 (MQ=255)
            gCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtcg                                                                                     <  1:3720437/101‑1 (MQ=255)
            gCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtcg                                                                                     >  2:3720850/1‑101 (MQ=255)
             cGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtcgt                                                                                    >  2:3720853/1‑101 (MQ=255)
             cGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtcgt                                                                                    >  1:3720854/1‑101 (MQ=255)
             cGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtc                                                                                      <  1:3720673/99‑1 (MQ=255)
              gggggAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACcgtcgt                                                                                    <  2:3720573/100‑1 (MQ=255)
              gggggAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGtt                                                                                   >  1:3720858/1‑101 (MQ=255)
                 ggAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGcc                                                                                <  1:3720526/101‑1 (MQ=255)
                 ggAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGcc                                                                                >  2:3720861/1‑101 (MQ=255)
                   aaCTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCgg                                                                              >  2:3720864/1‑101 (MQ=255)
                      tCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGTGTCAGGCGTAAAATCTCACCGTCGTTGCCGGttt                                                                           <  1:3720452/101‑1 (MQ=255)
                      tCCAAGTGATATCCATCATCGCATACAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGttt                                                                           <  2:3720562/101‑1 (MQ=255)
                       ccAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGtt                                                                                   >  1:3720872/1‑92 (MQ=255)
                       ccAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTa                                                                          >  2:3720871/1‑101 (MQ=255)
                       ccAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTa                                                                          >  2:3720868/1‑101 (MQ=255)
                         aaGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATc                                                                        <  2:3720547/101‑1 (MQ=255)
                           gTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATccc                                                                      <  2:3720388/101‑1 (MQ=255)
                            tGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCct                                                                     <  1:3720650/101‑1 (MQ=255)
                            tGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCct                                                                     >  1:3720876/1‑101 (MQ=255)
                            tGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCct                                                                     <  2:3720418/101‑1 (MQ=255)
                              atatCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgc                                                                   >  1:3720880/1‑101 (MQ=255)
                               tatCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgct                                                                  >  1:3720884/1‑101 (MQ=255)
                               tatCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgct                                                                  >  2:3720882/1‑101 (MQ=255)
                               tatCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgct                                                                  <  1:3720359/101‑1 (MQ=255)
                                atCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgctg                                                                 <  2:3720769/101‑1 (MQ=255)
                                atCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgctg                                                                 <  2:3720474/101‑1 (MQ=255)
                                 tCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTgg                                                                >  1:3720888/1‑101 (MQ=255)
                                     tcatcGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGcgcg                                                            >  1:3720893/1‑101 (MQ=255)
                                     tcatcGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGcgcg                                                            <  1:3720186/101‑1 (MQ=255)
                                     tcatcGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGcgcg                                                            >  2:3720890/1‑101 (MQ=255)
                                        tcGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCgggg                                                         <  2:3720291/101‑1 (MQ=255)
                                        tcGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCgggg                                                         >  2:3720896/1‑101 (MQ=255)
                                           cATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAAc                                                      <  2:3720336/101‑1 (MQ=255)
                                            aTCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCctgctg                                                                 >  1:3720902/1‑89 (MQ=255)
                                            aTCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAAct                                                     >  2:3720901/1‑101 (MQ=255)
                                            aTCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAAct                                                     <  2:3720600/101‑1 (MQ=255)
                                             tCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAActc                                                    >  1:3720905/1‑101 (MQ=255)
                                                 gTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCgg                                                >  1:3720910/1‑101 (MQ=255)
                                                 gTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCgg                                                >  2:3720911/1‑101 (MQ=255)
                                                   gcgcCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGtt                                              <  2:3720582/101‑1 (MQ=255)
                                                     gcCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCggg                                                          >  1:3720915/1‑87 (MQ=255)
                                                      cccGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAg                                           <  1:3720328/101‑1 (MQ=255)
                                                      cccGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAg                                           >  2:3720918/1‑101 (MQ=255)
                                                         ggTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCa                                            <  2:3720395/97‑1 (MQ=255)
                                                         ggTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCg                                        >  1:3720920/1‑101 (MQ=255)
                                                         ggTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCg                                        <  1:3720549/101‑1 (MQ=255)
                                                          gTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGt                                       >  2:3720924/1‑101 (MQ=255)
                                                             tATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGc                                    >  1:3720928/1‑101 (MQ=255)
                                                              aTCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCa                                   <  1:3720485/101‑1 (MQ=255)
                                                              aTCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCa                                   <  2:3720523/101‑1 (MQ=255)
                                                                ccccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCg                                        <  2:3720195/94‑1 (MQ=255)
                                                                ccccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCaaa                                 <  1:3720352/101‑1 (MQ=255)
                                                                  ccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAAcc                               <  1:3720469/101‑1 (MQ=255)
                                                                  ccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAAcc                               >  2:3720929/1‑101 (MQ=255)
                                                                  ccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAAcc                               <  1:3720461/101‑1 (MQ=255)
                                                                  ccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAAcc                               <  1:3720408/101‑1 (MQ=255)
                                                                  ccGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAAcc                               <  1:3720762/101‑1 (MQ=255)
                                                                   cGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCt                              <  2:3720530/101‑1 (MQ=255)
                                                                   cGCTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCt                              <  2:3720350/101‑1 (MQ=255)
                                                                     cTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTgg                            >  2:3720935/1‑101 (MQ=255)
                                                                     cTGATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTgg                            >  1:3720934/1‑101 (MQ=255)
                                                                       gATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTgg                            <  1:3720584/99‑1 (MQ=255)
                                                                       gATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCt                          >  2:3720943/1‑101 (MQ=255)
                                                                       gATGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCt                          >  1:3720940/1‑101 (MQ=255)
                                                                        aTGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTa                         <  1:3720219/101‑1 (MQ=255)
                                                                        aTGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTa                         <  1:3720427/101‑1 (MQ=255)
                                                                        aTGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACAGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTa                         >  1:3720945/1‑101 (MQ=255)
                                                                         tGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTAc                        <  2:3720478/101‑1 (MQ=255)
                                                                         tGCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTAc                        >  2:3720948/1‑101 (MQ=255)
                                                                          gCGGGGAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTAcc                       >  1:3720951/1‑101 (MQ=255)
                                                                               gAACACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCg                  >  2:3720955/1‑101 (MQ=255)
                                                                                aaCACCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCgg                 <  2:3720624/101‑1 (MQ=255)
                                                                                aaCACAAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCgg                 >  1:3720956/1‑101 (MQ=255)
                                                                                  cacCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGtt               >  1:3720959/1‑101 (MQ=255)
                                                                                   acCAGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGttt              <  1:3720603/101‑1 (MQ=255)
                                                                                      aGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATc           <  2:3720731/101‑1 (MQ=255)
                                                                                      aGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATc           <  2:3720438/101‑1 (MQ=255)
                                                                                      aGCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATc           >  1:3720963/1‑101 (MQ=255)
                                                                                       gCGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATcc          <  2:3720652/101‑1 (MQ=255)
                                                                                        cGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATccc         >  1:3720966/1‑101 (MQ=255)
                                                                                        cGTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATccc         <  2:3720540/101‑1 (MQ=255)
                                                                                         gTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATcccc        >  1:3720969/1‑101 (MQ=255)
                                                                                         gTCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATcccc        >  1:3720971/1‑101 (MQ=255)
                                                                                          tCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCg       <  1:3720341/101‑1 (MQ=255)
                                                                                          tCAGGCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCg       >  2:3720973/1‑101 (MQ=255)
                                                                                              gCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTaa   <  2:3720509/101‑1 (MQ=255)
                                                                                              gCGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTaa   >  2:3720978/1‑101 (MQ=255)
                                                                                               cGTAAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATc           >  1:3720980/1‑92 (MQ=255)
                                                                                                  |                                                                                                 
TCTACCGCAGAGGCGGGGGAACTCCAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCGGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTAAC  >  NC_000913/2877645‑2877840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A