Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	113	306.8	9564096	98.5%	9420634	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,725,082	A→C	A29A (GCT→GCG)	U712_19205 ←	Uncharacterized protein ywcI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,725,082	0	A	C	99.8%	1591.3 / NA	417	A29A (GCT→GCG)	U712_19205	Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (176/240); minor base T (0/1); total (176/241)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 420 total aligned reads displayed.

TGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑TTTTAGCAGCCCGTTTTCTCAG  >  CP006881/3724936‑3725227

tGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACcgcg                                                                                                                                                 <  2:2154834/150‑1 (MQ=255)

  cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                                                                               <  1:1639644/150‑1 (MQ=255)

  cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAACCGCCCTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGc                                                                                                                                               >  1:530583/1‑150 (MQ=255)

   aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGGGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                                                                              >  2:4460662/1‑150 (MQ=255)

     aCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGc                                                                                                                                            <  1:3070778/150‑1 (MQ=255)

       aTCTTCTTTAATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCATTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCg                                                                                                                                          <  1:31192/150‑1 (MQ=255)

           tcttTTGTAAAGCGCGGCGGCTTTCGCTCTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTACTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGt                                                                                                                                      <  1:1585808/150‑1 (MQ=255)

           tcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGt                                                                                                                                      <  1:3342955/150‑1 (MQ=255)

               ttATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAAGGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTCCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGttttt                                                                                                                                  <  1:843644/150‑1 (MQ=255)

                tataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGGTTTTc                                                                                                                                 >  2:594824/1‑150 (MQ=255)

                tataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTc                                                                                                                                 <  1:2064013/150‑1 (MQ=255)

                 ataAAGCGCGGCGGCTTTCGCTTTCTGGTTTTCTCCCTCATCCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTCCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCt                                                                                                                                <  1:4580673/150‑1 (MQ=255)

                 ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCCTTCACAGCCATCCGCCACTCCTAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCCAATAGACCGCGGCAGGCGCAgggttttt                                                                                                                                >  2:4133118/1‑143 (MQ=255)

                 ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGGGTCCTGCCGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGTGCCGAAAAGGCCGGGGCAGGCGCAGttttttt                                                                                                                                >  2:167190/1‑148 (MQ=255)

                 ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCt                                                                                                                                <  2:1109421/150‑1 (MQ=255)

                      gcgcGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCg                                                                                                                           <  1:2110489/150‑1 (MQ=255)

                      gcgcGGCGGCTTCCGCCTCCGGCTCTCCTTCCCCATCCACAGCCATCCGCCACTCATAAAGCGACACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCg                                                                                                                           <  2:3278782/150‑1 (MQ=255)

                        gcggcgGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGc                                                                                                                         <  1:2424160/150‑1 (MQ=255)

                         cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCg                                                                                                                        <  1:3615265/150‑1 (MQ=255)

                          gccggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCgg                                                                                                                       <  1:786491/148‑2 (MQ=255)

                            cggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCGATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCa                                                                                                                     <  1:422969/150‑1 (MQ=255)

                            cggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGGCCGCGGCAGCCGCAGTTTTTCTATCCGGccgca                                                                                                                     >  1:1229205/1‑146 (MQ=255)

                            cggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCa                                                                                                                     <  1:3791528/150‑1 (MQ=255)

                             ggcTTTCCCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAc                                                                                                                    <  2:3417163/150‑1 (MQ=255)

                              gctttcgctttcTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAcc                                                                                                                   <  1:718147/150‑1 (MQ=255)

                               cTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAccc                                                                                                                  >  1:288672/1‑150 (MQ=255)

                                tttCGCTTTCTGCTTTTCTTCCTCATCCCCAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCa                                                                                                                 <  2:2280624/150‑1 (MQ=255)

                                    gCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGGGTCACCCCGTtc                                                                                                             >  2:1466015/1‑150 (MQ=255)

                                     cTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtca                                                                                                            >  2:3849027/1‑150 (MQ=255)

                                      tttctGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcat                                                                                                           <  1:3697541/150‑1 (MQ=255)

                                      tttctGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcat                                                                                                           <  1:436392/150‑1 (MQ=255)

                                       ttctgcttttCTTCCTCATTCACAGCCATCCGCCATCCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcatc                                                                                                          <  1:3751890/144‑1 (MQ=255)

                                           gcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGCGCAGGTTTTCTGTCCGGCGTCACCCAGTTCATCaaaa                                                                                                      >  2:669319/3‑150 (MQ=255)

                                            ctttcCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCaaaaa                                                                                                     <  1:4731250/149‑1 (MQ=255)

                                             ttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAg                                                                                                    >  2:490433/1‑150 (MQ=255)

                                               ttcttcCTCATTCACAGCCATCCGCCATTCATAACACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAc                                                                                                  <  1:1009870/150‑1 (MQ=255)

                                               ttcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCCCAGTTTTTCTGTCCGGCGGCACCCAGTTCATCAAAAAGAc                                                                                                  >  1:1332913/1‑150 (MQ=255)

                                               tcctcccTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGCCCTGCGGCCTGCACACCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAc                                                                                                  <  1:3875123/145‑1 (MQ=255)

                                                tcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGAATATCTGCCCGGCGTCACCCAGTTCACCAAAAAAAcc                                                                                                 >  1:1557463/1‑150 (MQ=255)

                                                  ttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGGCGCAGGTTTTCTGTCCGGCGTCACCCAGGTCATCCAGAAGGCCAt                                                                                               >  2:2659581/1‑150 (MQ=255)

                                                   tcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCCAAAAGACCATc                                                                                              >  2:2106383/1‑150 (MQ=255)

                                                   tcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGGCCGGCGTCACCCCGTTCATCAAAAAGACCacc                                                                                              >  1:1177182/1‑148 (MQ=255)

                                                       catccccaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCcaca                                                                                          <  1:3507074/144‑1 (MQ=255)

                                                       cATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTTCGGCGGCACCCAGGTCCTCAAAAAGGCCATCcaca                                                                                          >  2:2384921/1‑150 (MQ=255)

                                                          tCACAGCCCCCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACAccc                                                                                       <  2:83665/150‑1 (MQ=255)

                                                           cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCg                                                                                      <  1:1837562/150‑1 (MQ=255)

                                                            acaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGt                                                                                     <  1:4644191/150‑1 (MQ=255)

                                                                ccATCCGCCCTTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGCCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAg                                                                                 <  1:1456285/150‑1 (MQ=255)

                                                                 cATCCGCCATTCATAAATCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGa                                                                                <  2:2234692/150‑1 (MQ=255)

                                                                 cATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGa                                                                                <  2:3157301/150‑1 (MQ=255)

                                                                    ccGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATAc                                                                             <  1:2675778/150‑1 (MQ=255)

                                                                    ccGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGATACATACGCTGAGCCGAATAGACCGCGGCAGGCGCAGTTTTTCTGTCCGGCGTCACCCCGGTCATCAAAAAGACCATCCACACCCCGAAAAATAc                                                                             >  1:477172/1‑150 (MQ=255)

                                                                      gCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACaa                                                                           <  2:1848126/150‑1 (MQ=255)

                                                                      gCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCACTTTTTCTGTCCGGCGGCACCCAGTTCATCAAAAAGGCCATCCACACCCGTAAAGATACaa                                                                           >  2:2836323/1‑150 (MQ=255)

                                                                        cattCATAATACGAAACGAGGTCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTGCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGc                                                                         <  1:4129932/147‑1 (MQ=255)

                                                                        cattCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGCAAAAGAACAAGc                                                                         >  1:2947981/4‑150 (MQ=255)

                                                                         atacATAACACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCa                                                                        <  1:1050570/147‑1 (MQ=255)

                                                                          ttCATAAAACGACACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaa                                                                       <  1:2314808/149‑1 (MQ=255)

                                                                           tCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaaa                                                                      <  1:188858/150‑1 (MQ=255)

                                                                            cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACCCCCGTAAAGATACAAGCAAAc                                                                     >  1:4511811/1‑150 (MQ=255)

                                                                            cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCCGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGGCCATCCACACCCGGAAAGAAACCAGCAGAc                                                                     >  2:4578654/1‑150 (MQ=255)

                                                                              tAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGt                                                                   <  1:950614/150‑1 (MQ=255)

                                                                              tAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGt                                                                   <  2:1751818/150‑1 (MQ=255)

                                                                              tAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGACACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGt                                                                   <  2:1949032/150‑1 (MQ=255)

                                                                               aaaaCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTTAAGATACAAGCAAACGtt                                                                  <  1:2505221/150‑1 (MQ=255)

                                                                                   cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCCTCAAAAAGGCCAACCCCACCCCCAAAGGTACAAGCAAACGGTTCAt                                                              >  2:1340582/1‑150 (MQ=255)

                                                                                   cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCAt                                                              <  1:4334022/150‑1 (MQ=255)

                                                                                   cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCAt                                                              <  1:400051/150‑1 (MQ=255)

                                                                                      aaCGAGTCCTGCGGCCTGCACACCCGCCTTTCTCTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACCCCCGTAAAGATACAAGCAAACGTTTCATAGa                                                           <  1:1252769/150‑1 (MQ=255)

                                                                                       acgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCCCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCACCCGCAAAGAGACAAGCCAACGGGTCATAGaa                                                          >  1:1385740/4‑150 (MQ=255)

                                                                                         gaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGGCACCCCATTCCTCAAAAAGACCATCCCCCCCCCTAAAAAAACAAGCCAACGGTTCATAGgaaa                                                        >  1:3431777/2‑150 (MQ=255)

                                                                                               tgcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGCCCGCGGCAGCCGCAGTTTTTCTGTCCGGCGCCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATcc                                                  <  1:1412519/149‑1 (MQ=255)

                                                                                               tgcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCTCCACCCCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATcc                                                  >  1:684374/2‑150 (MQ=255)

                                                                                                 cgGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCt                                                <  2:2913441/150‑1 (MQ=255)

                                                                                                 cgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGGAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCt                                                >  2:772304/1‑150 (MQ=255)

                                                                                                   gCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTcc                                              <  1:3906815/150‑1 (MQ=255)

                                                                                                   gCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCCAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGACACCCCGCTCATCAAAAAGCCCATCCTCACCCGTAAAGATACAAGCAAACGTTACATAGGAAAACATCCCTcc                                              >  2:2041348/1‑150 (MQ=255)

                                                                                                       gCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGctt                                          <  1:3207098/150‑1 (MQ=255)

                                                                                                        cacaGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGcttc                                         <  1:1125966/150‑1 (MQ=255)

                                                                                                          cagccgccTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGTCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACTAGCAAACGTTTCATAGAAAAACATCCCTCCGcttctt                                       <  1:1759782/148‑1 (MQ=255)

                                                                                                            gccgccTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTAACCCAGTTCATCAAAAAAACCATCCACACCCGGAAAGATACAAGCAAACGTATCAGAGAAAAACATCCCTCCGCTTCttta                                     >  1:2017353/1‑149 (MQ=255)

                                                                                                             ccgcgcttCTGTCGTATGTAGGCTGAGCCGAATTGCCCGCGGCAGCCGCAGTTTCTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCttttt                                    <  2:3560527/144‑1 (MQ=255)

                                                                                                               gcctttCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACCGTTCATAGAAAAACATCCCTCCGCCTCTTTTTgg                                  >  1:567495/4‑150 (MQ=255)

                                                                                                               gcctttCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTCCTGTCCGGCGTCCCCCCGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGATTCATAGAAAAACATCCCTCCGCCTCTCTTTgg                                  >  2:3699116/4‑150 (MQ=255)

                                                                                                                cctttCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCCCCCCTTCCTTTTggc                                 >  2:397698/3‑150 (MQ=255)

                                                                                                                     cTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTggctggca                            >  2:1221232/1‑150 (MQ=255)

                                                                                                                       ttGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGc                          <  2:207161/150‑1 (MQ=255)

                                                                                                                       ttGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGGCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAggcggc                          >  2:4226940/1‑150 (MQ=255)

                                                                                                                        tGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGGCACCCAGTTCATCAAAAAGACCATCCACCCCCCTAAAGATACAAGCAAACGTTTCATAGGAAAACCTCCCCCCCCCTCTTTTTGGCCGGCAGcc                         >  1:2655074/1‑150 (MQ=255)

                                                                                                                            aTGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑tttt                    <  1:1501987/150‑1 (MQ=255)

                                                                                                                             tGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAAATACAAGCAAACGTTTCATGGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGGC‑ttttt                   >  1:4433960/1‑149 (MQ=255)

                                                                                                                             gtttcgcgGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATGCAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑ttttt                   <  2:3749660/146‑2 (MQ=255)

                                                                                                                              gTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑ttttta                  >  2:4012865/1‑148 (MQ=255)

                                                                                                                               tACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCGGGCAGCC‑tttttag                 >  1:3155499/1‑147 (MQ=255)

                                                                                                                               tACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGAGTCACCCAGTTCAACAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑tttttag                 <  1:2381218/150‑4 (MQ=255)

                                                                                                                                        ccGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGtt         <  2:4311097/150‑1 (MQ=255)

                                                                                                                                            aTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCACCAAAAAGACCATCCACACCCGGAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTtct     >  1:625205/1‑150 (MQ=255)

                                                                                                                                              aGACCGCGGCTGCCGCAGTTTTTCTGTCCGCCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTATAGATACAAGCATACGTTCCATAGACAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCCTTTTTAGCAGCCCGTTTTCTCa   <  2:155633/150‑1 (MQ=255)

                                                                                                                                              aGACCGCGGCAGCCGCAGTTATTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCCTCCACACCCGTCAAGATACAAGCTAACGTTTCATAGAGAAACATCCCCCCGCCTCTCTTTGGCAGGCAGCCTTTTTAGCAGCCCGGTTtctcc   >  2:3198063/1‑149 (MQ=255)

                                                                                                                                               gACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCCGGCAGCCTTTTTAGCGGCCCGTTTTCTCAg  >  1:2745036/1‑150 (MQ=255)

TGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTGGCAGGCAGCC‑TTTTAGCAGCCCGTTTTCTCAG  >  CP006881/3724936‑3725227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A