Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F63 I0 R2 103 91.4 3852028 97.4% 3751875 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,633,657 C→T 100% C30Y (TGC→TAC)  yjjX ← non‑canonical purine NTP phosphatase, ITPase/XTPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,633,6570CT100.0% 222.1 / NA 70C30Y (TGC→TAC) yjjXnon‑canonical purine NTP phosphatase, ITPase/XTPase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (27/43);  total (27/43)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATA  >  NC_000913/4633526‑4633784
                                                                                                                                   |                                                                                                                               
ccACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCAGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCt                                                                                                                         <  1:941700/140‑1 (MQ=255)
 cACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCtt                                                                                                                        >  2:667576/1‑140 (MQ=255)
 cACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCtt                                                                                                                        >  2:1543543/1‑140 (MQ=255)
 cACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCACGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCtt                                                                                                                        >  2:1075119/1‑140 (MQ=255)
         aaTCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAg                                                                                                                <  1:1032179/140‑1 (MQ=255)
         aaTCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAg                                                                                                                <  1:1510426/140‑1 (MQ=255)
           tgaGCCTCTGGAAGTAAACGGCGGGCATTGTCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAt                                                                                                              <  2:1496506/138‑1 (MQ=255)
           tCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAt                                                                                                              <  2:240425/140‑1 (MQ=255)
           tCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAt                                                                                                              <  2:240372/140‑1 (MQ=255)
                ctctGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGt                                                                                                         <  2:548676/140‑1 (MQ=255)
                     gAAGTACACGGCGGGCATCGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                    <  2:1553769/140‑1 (MQ=255)
                     gAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                    <  2:1553636/140‑1 (MQ=255)
                     gAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                    <  2:1860146/140‑1 (MQ=255)
                     gAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                    <  1:1541447/140‑1 (MQ=255)
                     gAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                    <  2:1149788/140‑1 (MQ=255)
                          aaaCGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTg                                                                                               >  2:1351606/1‑140 (MQ=255)
                          aaaCGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTg                                                                                               >  2:1353889/1‑140 (MQ=255)
                              ggcggGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGa                                                                                           <  2:1584776/140‑1 (MQ=255)
                               gcggGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGaa                                                                                          <  1:95320/140‑1 (MQ=255)
                               gcggGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGaa                                                                                          <  1:1084228/140‑1 (MQ=255)
                                        ggCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGaa                                                                                 >  1:261784/1‑140 (MQ=255)
                                              ccGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                           <  1:53751/140‑1 (MQ=255)
                                              ccGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                           >  2:1836004/1‑140 (MQ=255)
                                                   ttCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGa                                                                      >  2:1145045/1‑140 (MQ=255)
                                                   ttCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAGCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCgggg                                                                      >  2:41108/1‑139 (MQ=255)
                                                   ttCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCATCGCCGAAGATCTCGTGACATGCCTGCAGAATGGCCTGAAGTTTAGCGGGa                                                                      >  2:1142086/1‑140 (MQ=255)
                                                         cgcCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATtggtg                                                                <  2:262340/140‑1 (MQ=255)
                                                         cgcCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATtggtg                                                                <  1:964236/140‑1 (MQ=255)
                                                                gcgcgTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGcac                                                         <  1:1283477/140‑1 (MQ=255)
                                                                     tgtcctccCTGCCAAAGGGCTGGTCCGGAACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATCCCTGCAGAATGGCCTGAATATTAGCGGGATTGGTGGTCGCACAGACa                                                    <  2:1634143/138‑1 (MQ=255)
                                                                         cTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACtt                                                <  2:608567/140‑1 (MQ=255)
                                                                         cTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACtt                                                <  2:608942/140‑1 (MQ=255)
                                                                            aCTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGt                                             <  2:1822567/140‑1 (MQ=255)
                                                                            aCTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGt                                             <  2:1822588/140‑1 (MQ=255)
                                                                                   aaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAt                                      <  1:791651/140‑1 (MQ=255)
                                                                                      ggCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAg                                   <  2:228214/140‑1 (MQ=255)
                                                                                      ggCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAg                                   <  2:228213/140‑1 (MQ=255)
                                                                                        cTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCa                                 >  2:1640594/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                    >  2:1394059/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                    >  2:827176/1‑140 (MQ=255)
                                                                                                      ctctctCGTCGGCAACGGTTGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCATAAAAtt                   <  2:1544995/138‑1 (MQ=255)
                                                                                                      cGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAtt                   <  2:1545093/140‑1 (MQ=255)
                                                                                                      cGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAtt                   <  2:1518102/140‑1 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGACATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 <  2:784733/140‑1 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGACTTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 >  2:910888/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 >  2:975779/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 >  2:589005/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 <  1:1823245/140‑1 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 >  2:975665/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                 >  2:975749/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAAGATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGACTGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCAGTACTCAGAATAttta                 >  2:909513/1‑138 (MQ=255)
                                                                                                          ctcGACGGCAACGGTTGCAATGTGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGTATGTTAGCGGGATTGGTGGTCGCACAGACAACATGGGGCATAATCAGCATGACTCAGAAAATGAACg               >  2:1573983/1‑140 (MQ=255)
                                                                                                          ctcGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACg               >  1:1011385/1‑140 (MQ=255)
                                                                                                           tcGACGGCAACGGATGCACTATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATGTTAGCGGGATTGGTGGTCGCACCGACAACTTGGTGCATAATCAGCAATACTCAGTAACTTAACGt              >  2:52906/1‑140 (MQ=255)
                                                                                                           tcGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGt              >  1:173672/1‑140 (MQ=255)
                                                                                                           tcGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGt              >  2:52864/1‑140 (MQ=255)
                                                                                                             gACGGCAACGGATGCAATTTGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTa            <  2:483049/140‑1 (MQ=255)
                                                                                                             gACGGCAACGGATGCAATATGGTATGATCCTTCGCCGAAGATCTCGTGATATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTa            <  2:488032/140‑1 (MQ=255)
                                                                                                             gACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTa            <  1:1336176/140‑1 (MQ=255)
                                                                                                             gACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTa            <  2:1223584/140‑1 (MQ=255)
                                                                                                               cGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAca          <  2:928151/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGATTTTTTGCGGGATTGGTGGTCGCAGAGACAACTTGGTGCATAATAAGCATTACTCAGTAATTTTACGTTAcag         <  2:1015223/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag         <  1:669397/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag         <  2:840716/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag         >  2:383825/1‑140 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag         >  2:382954/1‑140 (MQ=255)
                                                                                                                ggCAACGGATGCAAGATGGTAGGATCCTTCGCCGAAGATATCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag         <  2:1867790/140‑1 (MQ=255)
                                                                                                                  cAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcagca       >  2:1848175/1‑140 (MQ=255)
                                                                                                                       gATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGtata  <  2:486323/140‑1 (MQ=255)
                                                                                                                       catccAAGATGGTAGGATCCTACGCCCAACATCACGTGAAATGCCTCCAGAATGGACTGAATTTTAGCGCGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGtata  <  2:486179/136‑1 (MQ=255)
                                                                                                                                   |                                                                                                                               
CCACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATA  >  NC_000913/4633526‑4633784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A