Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F30 I0 R1 102 651.4 20597740 99.0% 20391762 149.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,633,743 C→T 100% M1M (ATG→ATA) † yjjX ← non‑canonical purine NTP phosphatase, ITPase/XTPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,633,7430CT99.7% 2716.8 / ‑3.9 733M1M (ATG→ATA) †yjjXnon‑canonical purine NTP phosphatase, ITPase/XTPase
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base T (349/380);  total (351/382)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 744 total aligned reads displayed.

TTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAA  >  NC_000913/4633596‑4633889
                                                                                                                                                   |                                                                                                                                                   
ttCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTAt                                                                                                                                                   >  1:10017678/1‑150 (MQ=255)
  ccTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATaa                                                                                                                                                 <  1:6478712/150‑1 (MQ=255)
    tCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATc                                                                                                                                               >  1:3100947/1‑150 (MQ=255)
    tCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATc                                                                                                                                               >  1:7330268/1‑150 (MQ=255)
    tCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATc                                                                                                                                               >  1:1782834/1‑150 (MQ=255)
         gCCAAAGGGCTGTCCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCAt                                                                                                                                          >  2:9362038/1‑150 (MQ=255)
          ccAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCAtt                                                                                                                                         >  2:6601873/1‑150 (MQ=255)
            aaaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTAc                                                                                                                                       <  2:823038/150‑1 (MQ=255)
            aaaGGGCTGTTCCGCTACACCGCACTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTAc                                                                                                                                       <  1:2746696/150‑1 (MQ=255)
             aaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACt                                                                                                                                      <  2:1773148/150‑1 (MQ=255)
              aGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTc                                                                                                                                     >  2:6980275/1‑150 (MQ=255)
               gggCTGTTCCGGGACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCa                                                                                                                                    <  2:8466851/150‑1 (MQ=255)
                ggCTGTTCCGGTACACCGCTCTCGACGGTAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAg                                                                                                                                   >  2:389502/1‑150 (MQ=255)
                 gCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGa                                                                                                                                  >  1:4115453/1‑150 (MQ=255)
                  cTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGaa                                                                                                                                 <  1:9642463/150‑1 (MQ=255)
                    gTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGaaaa                                                                                                                               <  1:1123289/150‑1 (MQ=255)
                         ggTACACCGCTCTCGACGGCAACGGATGTAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAAc                                                                                                                          >  2:7870148/1‑150 (MQ=255)
                         ggTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAAc                                                                                                                          >  1:4694836/1‑150 (MQ=255)
                         ggTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAAc                                                                                                                          <  1:4357398/150‑1 (MQ=255)
                          gTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACg                                                                                                                         >  2:9078673/1‑150 (MQ=255)
                          gTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACg                                                                                                                         >  2:8105332/1‑150 (MQ=255)
                             cacCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTa                                                                                                                      <  2:7620728/150‑1 (MQ=255)
                             cacCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTa                                                                                                                      <  2:2760737/150‑1 (MQ=255)
                               ccGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTAca                                                                                                                    <  1:3926367/150‑1 (MQ=255)
                                cGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTAcag                                                                                                                   >  1:5536216/1‑150 (MQ=255)
                                 gCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTAcagc                                                                                                                  >  1:3550042/1‑150 (MQ=255)
                                  ctctCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTAcagca                                                                                                                 <  2:2524124/150‑1 (MQ=255)
                                    ctcGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGt                                                                                                               <  1:5293418/150‑1 (MQ=255)
                                       gACGGCAACGGATGCATTATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGtata                                                                                                            <  1:621522/150‑1 (MQ=255)
                                        aCGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAc                                                                                                           <  2:1960524/150‑1 (MQ=255)
                                         cGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑g                                                                                                         <  2:5917980/150‑1 (MQ=255)
                                          ggCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑gg                                                                                                        <  2:9865190/150‑1 (MQ=255)
                                            cAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaa                                                                                                      <  1:9522940/150‑1 (MQ=255)
                                            cAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaa                                                                                                      <  1:3673066/150‑1 (MQ=255)
                                            cAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaa                                                                                                      <  1:1669603/150‑1 (MQ=255)
                                             aaCGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaaa                                                                                                     >  2:4129316/1‑150 (MQ=255)
                                              aCGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaaaa                                                                                                    >  1:6695463/1‑150 (MQ=255)
                                               cGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaaaaa                                                                                                   <  2:5667232/150‑1 (MQ=255)
                                               cGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaaaaa                                                                                                   <  2:1508513/150‑1 (MQ=255)
                                                 gATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGaaaaaaa                                                                                                 >  1:2559839/1‑150 (MQ=255)
                                                   tGCAAGCTGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATCTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGc                                                                                               <  2:4424591/150‑1 (MQ=255)
                                                     cAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCAt                                                                                             <  2:5043899/150‑1 (MQ=255)
                                                        tatGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGtt                                                                                          >  1:3748253/1‑150 (MQ=255)
                                                        tatGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGtt                                                                                          >  2:5582045/1‑150 (MQ=255)
                                                         atGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAATTTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTa                                                                                         <  1:3290250/150‑1 (MQ=255)
                                                         atGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTGGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTa                                                                                         >  2:7100441/1‑150 (MQ=255)
                                                           ggCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACa                                                                                       <  1:5828007/150‑1 (MQ=255)
                                                            gCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAg                                                                                      <  1:7787974/150‑1 (MQ=255)
                                                            gCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAg                                                                                      <  1:7557556/150‑1 (MQ=255)
                                                                 aTCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGtata                                                                                 >  1:5994896/1‑150 (MQ=255)
                                                                   ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATAcc                                                                               <  1:7885448/150‑1 (MQ=255)
                                                                     ttCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTa                                                                             >  2:4274454/1‑150 (MQ=255)
                                                                     ttCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTa                                                                             <  2:6842634/150‑1 (MQ=255)
                                                                     ttCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTa                                                                             <  2:211986/150‑1 (MQ=255)
                                                                       cGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGt                                                                           <  1:5735665/150‑1 (MQ=255)
                                                                        gCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTc                                                                          <  1:7991265/150‑1 (MQ=255)
                                                                         ccGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTcc                                                                         <  2:8520189/150‑1 (MQ=255)
                                                                          cGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCg                                                                        <  2:2956054/150‑1 (MQ=255)
                                                                           gAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGACAAAAAGCATGTTACAGGTATACCTAGTCCGc                                                                       >  2:6148698/1‑150 (MQ=255)
                                                                               aTCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACAGAAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCAc                                                                    <  2:10285294/150‑1 (MQ=255)
                                                                               aTCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACg                                                                   >  2:3237956/1‑150 (MQ=255)
                                                                               aTCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACg                                                                   <  2:6316465/150‑1 (MQ=255)
                                                                                  tcGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTg                                                                >  1:2956949/1‑150 (MQ=255)
                                                                                  tcGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTg                                                                <  2:1132092/150‑1 (MQ=255)
                                                                                   cGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGa                                                               <  2:2858401/150‑1 (MQ=255)
                                                                                     tGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTTGTGTATAATCAGCATTACTCAGAAAATTACCGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGaaa                                                             <  2:9493491/150‑1 (MQ=255)
                                                                                         aTGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCa                                                         <  1:1535980/150‑1 (MQ=255)
                                                                                            ccTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACACAGAAAATAAACGTTACAGCAGTATAC‑GGACAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTg                                                      >  1:10194272/1‑150 (MQ=255)
                                                                                              tGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGa                                                    <  2:9729964/150‑1 (MQ=255)
                                                                                               gCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGaa                                                   <  2:7303637/150‑1 (MQ=255)
                                                                                                cAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAAc                                                  >  1:1880358/1‑150 (MQ=255)
                                                                                                cAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAAc                                                  >  1:8819914/1‑150 (MQ=255)
                                                                                                         cTGATTTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGTTATACCTAGTCCGCCAGGGTGAAACGCAGTGGAACGCCGAGCGa                                         <  1:2304100/150‑1 (MQ=255)
                                                                                                         cTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGa                                         >  1:4547520/1‑150 (MQ=255)
                                                                                                         cTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGa                                         >  2:1337987/1‑150 (MQ=255)
                                                                                                          tGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                        <  2:7147641/150‑1 (MQ=255)
                                                                                                          tGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                        >  1:7154628/1‑150 (MQ=255)
                                                                                                          tGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACACAGAAAATTAACGTTACAGCAGTATAC‑GTAAAAAATGCTGGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                        <  1:9168539/150‑1 (MQ=255)
                                                                                                            aaTTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGt                                      <  1:9771519/150‑1 (MQ=255)
                                                                                                              ttttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCACCACGGTGAAACGCAGTGGAACGCCGAGCGACGTAt                                    >  1:9033670/1‑150 (MQ=255)
                                                                                                                  aGCGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACACAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAg                                <  1:1973845/150‑1 (MQ=255)
                                                                                                                    cGGGATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAggg                              <  2:5354542/150‑1 (MQ=255)
                                                                                                                     gtgATTGGTGGTCGCACAGACAACTTGGTTTATAATCAGAATTACTAAGAAAATTAACGTTACAGCAGTATAC‑GTAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGc                             <  1:1306731/148‑1 (MQ=255)
                                                                                                                     gggATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGc                             <  1:8535202/150‑1 (MQ=255)
                                                                                                                     gggATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGc                             <  2:4927368/150‑1 (MQ=255)
                                                                                                                       gATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCa                           <  2:1641447/150‑1 (MQ=255)
                                                                                                                       gATTGGTGGTCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGGATTCAGGGCCa                           >  2:964356/1‑150 (MQ=255)
                                                                                                                           ggtggtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCt                       <  1:9362038/150‑1 (MQ=255)
                                                                                                                           ggtggtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCt                       <  2:3637530/150‑1 (MQ=255)
                                                                                                                             tggtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGa                     <  2:8611190/150‑1 (MQ=255)
                                                                                                                             tggtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGa                     <  2:10067417/150‑1 (MQ=255)
                                                                                                                             tggtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGa                     <  1:8325927/150‑1 (MQ=255)
                                                                                                                               gtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACa                   <  2:4694836/150‑1 (MQ=255)
                                                                                                                               gtCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACa                   <  2:10159622/150‑1 (MQ=255)
                                                                                                                                tCGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑TTAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAg                  >  2:3468521/1‑150 (MQ=255)
                                                                                                                                 cGCACAGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGc                 <  1:6955307/150‑1 (MQ=255)
                                                                                                                                   cacaGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGccc               >  1:4906659/1‑150 (MQ=255)
                                                                                                                                   cacaGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGccc               >  2:2343575/1‑150 (MQ=255)
                                                                                                                                      aGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTCACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCt            <  2:6491112/150‑1 (MQ=255)
                                                                                                                                      aGACAACTTGGTGTATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCt            <  2:8848186/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAC‑GGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAA  >  NC_000913/4633596‑4633889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A